Format

Send to:

Choose Destination

zgc:174193 zgc:174193 [ Danio rerio (zebrafish) ]

Gene ID: 100137109, updated on 22-Aug-2016
Official Symbol
zgc:174193provided by ZNC
Official Full Name
zgc:174193provided by ZNC
Primary source
ZFIN:ZDB-GENE-080215-8
See related
Ensembl:ENSDARG00000088743
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Annotation information
Annotation category: partial on reference assembly
See zgc:174193 in Genome Data Viewer Map Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
105 current GRCz10 (GCF_000002035.5) 10 NC_007121.6 (34270883..34276377)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (35243025..35248519)

Chromosome 10 - NC_007121.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108191495 Neighboring gene uncharacterized LOC103911765 Neighboring gene serine/threonine-protein kinase pim-1-like Neighboring gene serine protease HTRA2, mitochondrial-like

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
uncharacterized protein LOC100137109

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114706.1NP_001108178.1  uncharacterized protein LOC100137109

    See identical proteins and their annotated locations for NP_001108178.1

    Status: PREDICTED

    Source sequence(s)
    BC155125
    UniProtKB/TrEMBL
    A9JSY1
    Related
    ENSDARP00000139026, ENSDART00000169333
    Conserved Domains (2) summary
    cd00987
    Location:102186
    PDZ_serine_protease; PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind ...
    pfam13365
    Location:261
    Trypsin_2; Trypsin-like peptidase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007121.6 Reference GRCz10 Primary Assembly

    Range
    34270883..34276377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)