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prvb parvalbumin beta [ Salmo salar (Atlantic salmon) ]

Gene ID: 100137050, updated on 30-Nov-2023

Summary

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Gene symbol
prvb
Gene description
parvalbumin beta
See related
Ensembl:ENSSSAG00000096683
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
PRVB2; pvalb2
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Genomic context

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Location:
chromosome: ssa28
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa28 NC_059469.1 (15884114..15886603)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa28 NC_027327.1 (15581959..15584382)

Chromosome ssa28 - NC_059469.1Genomic Context describing neighboring genes Neighboring gene Parvalbumin, thymic Neighboring gene parvalbumin 2 Neighboring gene parvalbumin 9 Neighboring gene vacuolar fusion protein CCZ1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of two distinct cDNAs encoding parvalbumin, the major allergen of Atlantic salmon (Salmo salar). Lindstrøm CD, et al. Scand J Immunol, 1996 Oct. PMID 8845026
  2. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  3. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
parvalbumin beta 2
Names
major allergen Sal s 1
parvalbumin beta-2
parvalbumin like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123717.1 → NP_001117189.1  parvalbumin beta 2

    See identical proteins and their annotated locations for NP_001117189.1

    Status: PROVISIONAL

    Source sequence(s)
    X97825
    UniProtKB/Swiss-Prot
    Q91483
    UniProtKB/TrEMBL
    B5DH16
    Related
    ENSSSAP00000061243.1, ENSSSAT00000091126.2
    Conserved Domains (2) summary
    cd16251
    Location:42 → 71
    EFh_parvalbumin_like; EF-hand motif [structural motif]
    cl25356
    Location:22 → 107
    EFh_parvalbumin_like; EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059469.1 Reference Ssal_v3.1

    Range
    15884114..15886603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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