U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

st3gal-i alpha2,3-sialyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100136102, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
st3gal-i
Gene description
alpha2,3-sialyltransferase
See related
Ensembl:ENSOMYG00000075936
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See st3gal-i in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 6 NC_048570.1 (87749056..87759565)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 25 NC_035101.1 (9669159..9680957, complement)

Chromosome 6 - NC_048570.1Genomic Context describing neighboring genes Neighboring gene calmodulin-like protein 4 Neighboring gene ceroid-lipofuscinosis neuronal protein 6 Neighboring gene uncharacterized LOC118964960 Neighboring gene integrin alpha-11-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha2,3-sialyltransferase
NP_001117873.1
XP_036835002.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124401.1 → NP_001117873.1  alpha2,3-sialyltransferase

    See identical proteins and their annotated locations for NP_001117873.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ585760
    UniProtKB/TrEMBL
    A0A8C7UE15, Q70D59
    Related
    ENSOMYP00000095372.2, ENSOMYT00000103652.2
    Conserved Domains (1) summary
    pfam00777
    Location:69 → 322
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048570.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    87749056..87759565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036979107.1 → XP_036835002.1  alpha2,3-sialyltransferase isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:28 → 252
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases