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esrrb estrogen-related receptor beta [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100125508, updated on 8-Mar-2024

Summary

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Gene symbol
esrrb
Gene description
estrogen-related receptor beta
See related
EnsemblRapid:ENSORLG00000016581
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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See esrrb in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 22 NC_019880.2 (13423045..13462213)
102 previous assembly ASM31367v1 (GCF_000313675.1) 22 NC_019880.1 (13094232..13133636)

Chromosome 22 - NC_019880.2Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 43 Neighboring gene G-patch domain containing 2 like Neighboring gene uncharacterized LOC110017564 Neighboring gene prospero homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
steroid hormone receptor ERR2
Names
estrogen-related receptor beta type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104918.1 → NP_001098388.1  steroid hormone receptor ERR2

    See identical proteins and their annotated locations for NP_001098388.1

    Status: PROVISIONAL

    Source sequence(s)
    EF544133
    UniProtKB/TrEMBL
    A0A3P9IXW6, A0A3P9KA21, A5HNC2
    Related
    ENSORLP00000020759.3, ENSORLT00000020760.3
    Conserved Domains (2) summary
    cd06946
    Location:212 → 431
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:97 → 193
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019880.2 Reference ASM223467v1 Primary Assembly

    Range
    13423045..13462213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020713358.2 → XP_020569017.1  steroid hormone receptor ERR2 isoform X6

    UniProtKB/TrEMBL
    A0A3B3HM45, A0A3P9IXW0, A0A3P9KAA0
    Conserved Domains (2) summary
    cd06946
    Location:229 → 449
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:111 → 210
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  2. XM_020713360.2 → XP_020569019.1  steroid hormone receptor ERR2 isoform X7

    UniProtKB/TrEMBL
    A0A3P9KA21
    Conserved Domains (2) summary
    cd06946
    Location:215 → 435
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:97 → 196
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  3. XM_020713354.2 → XP_020569013.1  steroid hormone receptor ERR2 isoform X1

    UniProtKB/TrEMBL
    A0A3P9LVL5
    Conserved Domains (2) summary
    cd06946
    Location:259 → 479
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:141 → 240
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  4. XM_020713357.2 → XP_020569016.1  steroid hormone receptor ERR2 isoform X5

    UniProtKB/TrEMBL
    A0A3B3HP23, A0A3P9HBL7, A0A3P9K9R8
    Related
    ENSORLP00000033638.2, ENSORLT00000043655.2
    Conserved Domains (2) summary
    cd06946
    Location:236 → 456
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:118 → 217
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  5. XM_020713356.2 → XP_020569015.1  steroid hormone receptor ERR2 isoform X3

    UniProtKB/TrEMBL
    A0A3P9LVL5
    Conserved Domains (2) summary
    cd06946
    Location:256 → 476
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:141 → 237
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  6. XM_020713355.2 → XP_020569014.1  steroid hormone receptor ERR2 isoform X2

    UniProtKB/TrEMBL
    A0A3P9LVL5
    Related
    ENSORLP00000027367.2, ENSORLT00000034153.2
    Conserved Domains (2) summary
    cd06946
    Location:259 → 478
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:141 → 240
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  7. XM_011490105.3 → XP_011488407.1  steroid hormone receptor ERR2 isoform X4

    UniProtKB/TrEMBL
    A0A3B3H673, A0A3P9IYB6, A0A3P9LVL5
    Related
    ENSORLP00000074915.1, ENSORLT00000058590.1
    Conserved Domains (2) summary
    cd06946
    Location:256 → 475
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:141 → 237
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  8. XM_020713359.2 → XP_020569018.1  steroid hormone receptor ERR2 isoform X6

    UniProtKB/TrEMBL
    A0A3B3HM45, A0A3P9IXW0, A0A3P9KAA0
    Conserved Domains (2) summary
    cd06946
    Location:229 → 449
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:111 → 210
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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