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bbs7 Bardet-Biedl syndrome 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100125216, updated on 8-Mar-2024

Summary

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Official Symbol
bbs7provided by Xenbase
Official Full Name
Bardet-Biedl syndrome 7provided by Xenbase
Primary source
Xenbase:XB-GENE-996061
See related
Ensembl:ENSXETG00000031279
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
bbs2l1
Orthologs
human mouse all
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Genomic context

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See bbs7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (66800484..66822461)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (57407215..57429837)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene bridge-like lipid transfer protein family member 1 Neighboring gene transient receptor potential cation channel, subfamily C, member 3 Neighboring gene cyclin A2 Neighboring gene exosome component 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of BBSome IEA
Inferred from Electronic Annotation
more info
  
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Bardet-Biedl syndrome 7 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    66800484..66822461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031902708.1 → XP_031758568.1  Bardet-Biedl syndrome 7 protein

    UniProtKB/TrEMBL
    A0A5S6MHC1, A0A6I8R4Z4, F6VNP5
    Conserved Domains (1) summary
    cl24051
    Location:169 → 268
    BBS2_Mid; Ciliary BBSome complex subunit 2, middle region

  2. XM_002941891.5 → XP_002941937.1  Bardet-Biedl syndrome 7 protein

    See identical proteins and their annotated locations for XP_002941937.1

    UniProtKB/TrEMBL
    A0A5S6MHC1, A0A6I8R4Z4, F6VNP5
    Conserved Domains (1) summary
    cl24051
    Location:169 → 268
    BBS2_Mid; Ciliary BBSome complex subunit 2, middle region

  3. XM_004911111.4 → XP_004911168.1  Bardet-Biedl syndrome 7 protein

    See identical proteins and their annotated locations for XP_004911168.1

    UniProtKB/TrEMBL
    A0A5S6MHC1, A0A6I8R4Z4, F6VNP5
    Related
    ENSXETP00000079873.2, ENSXETT00000091075.2
    Conserved Domains (1) summary
    cl24051
    Location:169 → 268
    BBS2_Mid; Ciliary BBSome complex subunit 2, middle region

  4. XM_004911110.4 → XP_004911167.1  Bardet-Biedl syndrome 7 protein

    See identical proteins and their annotated locations for XP_004911167.1

    UniProtKB/TrEMBL
    A0A5S6MHC1, A0A6I8R4Z4, F6VNP5
    Related
    ENSXETP00000002216.3, ENSXETT00000002216.5
    Conserved Domains (1) summary
    cl24051
    Location:169 → 268
    BBS2_Mid; Ciliary BBSome complex subunit 2, middle region

  5. XM_012955563.3 → XP_012811017.1  Bardet-Biedl syndrome 7 protein

    See identical proteins and their annotated locations for XP_012811017.1

    UniProtKB/TrEMBL
    A0A5S6MHC1, A0A6I8R4Z4, F6VNP5
    Conserved Domains (1) summary
    cl24051
    Location:169 → 268
    BBS2_Mid; Ciliary BBSome complex subunit 2, middle region
Nucleotide Protein Strain
Heading Accession and Version

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