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lsamp limbic system associated membrane protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124984, updated on 8-Mar-2024

Summary

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Official Symbol
lsampprovided by Xenbase
Official Full Name
limbic system associated membrane proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-5759171
See related
Ensembl:ENSXETG00000016639
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
2G9; lamp; iglon3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (4313793..5626768, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (1118177..1501233, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108645742 Neighboring gene U2 spliceosomal RNA Neighboring gene growth associated protein 43 Neighboring gene immunoglobulin superfamily member 11 Neighboring gene testis expressed 55

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
limbic system-associated membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102915.1 → NP_001096385.1  limbic system-associated membrane protein precursor

    See identical proteins and their annotated locations for NP_001096385.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135971
    UniProtKB/TrEMBL
    A0A803K0M9, A4IID2
    Related
    ENSXETP00000113850.1, ENSXETT00000106169.1
    Conserved Domains (4) summary
    smart00408
    Location:229 → 294
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:221 → 304
    IG_like; Immunoglobulin like
    pfam07679
    Location:129 → 212
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:35 → 125
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    4313793..5626768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031895608.1 → XP_031751468.1  limbic system-associated membrane protein isoform X7

    UniProtKB/TrEMBL
    A0A8J1J0U9, F6R5Y7
    Related
    ENSXETP00000092919.2, ENSXETT00000097373.2
    Conserved Domains (4) summary
    pfam07679
    Location:218 → 297
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 201
    Ig_3; Immunoglobulin domain
    cd00096
    Location:219 → 225
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  2. XM_031895613.1 → XP_031751473.1  limbic system-associated membrane protein isoform X12

    UniProtKB/TrEMBL
    A0A6I8SLB6, A0A8J1J0V4
    Conserved Domains (4) summary
    pfam07679
    Location:223 → 302
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 206
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  3. XM_031895605.1 → XP_031751465.1  limbic system-associated membrane protein isoform X4

    UniProtKB/TrEMBL
    A0A6I8PQ10, F6R5Y7
    Related
    ENSXETP00000059417.3, ENSXETT00000063243.3
    Conserved Domains (4) summary
    pfam07679
    Location:223 → 302
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 206
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  4. XM_031895611.1 → XP_031751471.1  limbic system-associated membrane protein isoform X10

    UniProtKB/TrEMBL
    A0A6I8SLB6, A0A8J1J474
    Conserved Domains (3) summary
    pfam13927
    Location:223 → 302
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  5. XM_031895603.1 → XP_031751463.1  limbic system-associated membrane protein isoform X2

    UniProtKB/TrEMBL
    A0A8J1J0U4, F6R5Y7
    Conserved Domains (3) summary
    pfam13927
    Location:223 → 302
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  6. XM_031895615.1 → XP_031751475.1  limbic system-associated membrane protein isoform X14

    UniProtKB/TrEMBL
    A0A6I8SLB6, A0A8J1J380
    Conserved Domains (4) summary
    pfam07679
    Location:218 → 297
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 201
    Ig_3; Immunoglobulin domain
    cd00096
    Location:219 → 225
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  7. XM_031895614.1 → XP_031751474.1  limbic system-associated membrane protein isoform X13

    UniProtKB/TrEMBL
    A0A6I8S0K3, A0A6I8SLB6
    Related
    ENSXETP00000086913.2, ENSXETT00000072651.2
    Conserved Domains (4) summary
    pfam07679
    Location:218 → 297
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 201
    Ig_3; Immunoglobulin domain
    cd00096
    Location:219 → 225
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  8. XM_031895612.1 → XP_031751472.1  limbic system-associated membrane protein isoform X11

    UniProtKB/TrEMBL
    A0A6I8SLB6, A0A8J1J0U3
    Conserved Domains (3) summary
    pfam13927
    Location:223 → 302
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  9. XM_031895607.1 → XP_031751467.1  limbic system-associated membrane protein isoform X6

    UniProtKB/TrEMBL
    A0A8J1J0T8, F6R5Y7
    Related
    ENSXETP00000036304.5, ENSXETT00000036304.5
    Conserved Domains (4) summary
    pfam07679
    Location:218 → 297
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 201
    Ig_3; Immunoglobulin domain
    cd00096
    Location:219 → 225
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  10. XM_031895604.1 → XP_031751464.1  limbic system-associated membrane protein isoform X3

    UniProtKB/TrEMBL
    A0A8J1J0U0, F6R5Y7
    Conserved Domains (4) summary
    pfam07679
    Location:223 → 302
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:131 → 206
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  11. XM_031895610.1 → XP_031751470.1  limbic system-associated membrane protein isoform X9

    UniProtKB/TrEMBL
    A0A6I8SLB6, A0A8J1J373
    Conserved Domains (3) summary
    pfam13927
    Location:223 → 302
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  12. XM_031895609.1 → XP_031751469.1  limbic system-associated membrane protein isoform X8

    UniProtKB/TrEMBL
    A0A6I8SLB6, A0A8J1J0U5
    Conserved Domains (3) summary
    pfam13927
    Location:223 → 302
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  13. XM_031895602.1 → XP_031751462.1  limbic system-associated membrane protein isoform X1

    UniProtKB/TrEMBL
    A0A8J1J0T3, F6R5Y7
    Conserved Domains (3) summary
    pfam13927
    Location:223 → 302
    Ig_3; Immunoglobulin domain
    cd00096
    Location:224 → 230
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

  14. XM_031895606.1 → XP_031751466.1  limbic system-associated membrane protein isoform X5

    UniProtKB/TrEMBL
    A0A8J1J468, F6R5Y7
    Conserved Domains (3) summary
    pfam13927
    Location:218 → 297
    Ig_3; Immunoglobulin domain
    cd00096
    Location:219 → 225
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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