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tpp1 tripeptidyl peptidase I [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124868, updated on 8-Mar-2024

Summary

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Official Symbol
tpp1provided by Xenbase
Official Full Name
tripeptidyl peptidase Iprovided by Xenbase
Primary source
Xenbase:XB-GENE-997325
See related
Ensembl:ENSXETG00000049274
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
cln2; gig1; lpic
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (180675939..180700302, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016688206.1 (415..942)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene dynein heavy chain domain 1 Neighboring gene ribosomal RNA processing 8 Neighboring gene integrin linked kinase Neighboring gene transient receptor potential cation channel, subfamily M, member 2 like Neighboring gene zinc finger and SCAN domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tripeptidyl-peptidase 1
NP_001096294.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102824.1 → NP_001096294.1  tripeptidyl-peptidase 1 precursor

    See identical proteins and their annotated locations for NP_001096294.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135587
    UniProtKB/TrEMBL
    A0A803JGM7, A4IHM3
    Related
    ENSXETP00000107032.1, ENSXETT00000111478.1
    Conserved Domains (2) summary
    cd04056
    Location:199 → 560
    Peptidases_S53; Peptidase domain in the S53 family
    smart00944
    Location:37 → 173
    Pro-kuma_activ; Pro-kumamolisin, activation domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    180675939..180700302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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