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tgfbeta-na4 transforming growth factor beta superfamily signaling ligand [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100101816, updated on 21-Dec-2023

Summary

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Gene symbol
tgfbeta-na4
Gene description
transforming growth factor beta superfamily signaling ligand
See related
Ensembl:ENSCING00000009142
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 2 NC_020167.2 (5597877..5605156, complement)

Chromosome 2 - NC_020167.2Genomic Context describing neighboring genes Neighboring gene protein phosphatase methylesterase 1-like Neighboring gene alpha-ketoglutarate-dependent sulfate ester dioxygenase-like Neighboring gene uncharacterized LOC113475759 Neighboring gene ATP sulfurylase/APS kinase Neighboring gene membrane-associated progesterone receptor component 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020167.2 Chromosome 2 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta superfamily signaling ligand
Names
Ci-TGFbeta-NA4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100129.1 → NP_001093599.1  transforming growth factor beta superfamily signaling ligand precursor

    See identical proteins and their annotated locations for NP_001093599.1

    Status: PROVISIONAL

    Source sequence(s)
    AB299370
    UniProtKB/TrEMBL
    A0A1W2VQX5, A4PIG2, F6TJD9
    Related
    ENSCINP00000021781, ENSCINT00000022027
    Conserved Domains (1) summary
    pfam00019
    Location:336 → 441
    TGF_beta; Transforming growth factor beta like domain

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020167.2 Reference KH Primary Assembly

    Range
    5597877..5605156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009859188.3 → XP_009857490.1  transforming growth factor beta superfamily signaling ligand isoform X1

    UniProtKB/TrEMBL
    F6TJD9
    Conserved Domains (1) summary
    pfam00019
    Location:333 → 438
    TGF_beta; Transforming growth factor beta like domain

  2. XM_018816412.2 → XP_018671957.1  transforming growth factor beta superfamily signaling ligand isoform X3

    UniProtKB/TrEMBL
    F6TJD9

  3. XM_018816410.2 → XP_018671955.1  transforming growth factor beta superfamily signaling ligand isoform X2

    UniProtKB/TrEMBL
    F6TJD9
Nucleotide Protein
Heading Accession and Version

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