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Hmg-s 3-hydroxy-3-methylglutaryl-CoA synthase [ Bombyx mori (domestic silkworm) ]

Gene ID: 100101203, updated on 9-Feb-2024

Summary

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Gene symbol
Hmg-s
Gene description
3-hydroxy-3-methylglutaryl-CoA synthase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Also known as
Hmg-s_bm
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Genomic context

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See Hmg-s in Genome Data Viewer
Location:
chromosome: 19
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 19 NC_085125.1 (10665726..10668276, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 19 NC_051376.1 (10452176..10454726, complement)

Chromosome 19 - NC_085125.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101740574 Neighboring gene uncharacterized LOC101740711 Neighboring gene alpha-N-acetylgalactosaminidase Neighboring gene ankyrin repeat and LEM domain-containing protein 1 Neighboring gene zinc finger protein 608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Control of juvenile hormone biosynthesis in Bombyx mori: cloning of the enzymes in the mevalonate pathway and assessment of their developmental expression in the corpora allata. Kinjoh T, et al. Insect Biochem Mol Biol, 2007 Aug. PMID 17628279
  2. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  3. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-hydroxy-3-methylglutaryl-CoA synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099827.1 → NP_001093297.1  3-hydroxy-3-methylglutaryl-CoA synthase

    See identical proteins and their annotated locations for NP_001093297.1

    Status: PROVISIONAL

    Source sequence(s)
    AB274989
    UniProtKB/TrEMBL
    A5A798
    Conserved Domains (3) summary
    TIGR01833
    Location:6 → 455
    HMG-CoA-S_euk; 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade
    pfam08540
    Location:178 → 455
    HMG_CoA_synt_C; Hydroxymethylglutaryl-coenzyme A synthase C terminal
    cl09938
    Location:7 → 177
    cond_enzymes; Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the ...

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085125.1 Reference ASM3026992v2 Primary Assembly

    Range
    10665726..10668276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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