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SYNM synemin [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100077265, updated on 8-Mar-2024

Summary

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Gene symbol
SYNM
Gene description
synemin
See related
Ensembl:ENSOANG00000000137
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 5 NC_041732.1 (29205921..29236893)

Chromosome 5 - NC_041732.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 1 receptor Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114812262 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene tetratricopeptide repeat domain 23 Neighboring gene leucine rich repeat containing 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041732.1 Chromosome 5 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intermediate filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vinculin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fast-twitch skeletal muscle fiber contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in costamere IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neurofilament cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synemin
Names
synemin, intermediate filament protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041732.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    29205921..29236893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029065014.2 → XP_028920847.1  synemin

    UniProtKB/TrEMBL
    A0A6I8NRJ5, F6W7I7
    Related
    ENSOANP00000000262.2
    Conserved Domains (2) summary
    PTZ00121
    Location:437 → 1105
    PTZ00121; MAEBL; Provisional
    pfam00038
    Location:11 → 324
    Filament; Intermediate filament protein
Nucleotide Protein
Heading Accession and Version

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