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HDX highly divergent homeobox [ Equus caballus (horse) ]

Gene ID: 100071712, updated on 8-Mar-2024

Summary

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Official Symbol
HDXprovided by VGNC
Official Full Name
highly divergent homeoboxprovided by VGNC
Primary source
VGNC:VGNC:18725
See related
Ensembl:ENSECAG00000024862
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
12
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (67236165..67430916, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (63546357..63661510, complement)

Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene cylicin 1 Neighboring gene ribosomal protein S6 kinase A6 Neighboring gene ubiquitin-conjugating enzyme E2 D2-like Neighboring gene connector enhancer of kinase suppressor of ras 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
highly divergent homeobox

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009175.3 Reference EquCab3.0 Primary Assembly

    Range
    67236165..67430916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023633281.1 → XP_023489049.1  highly divergent homeobox isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H0L7
    Related
    ENSECAP00000026516.3, ENSECAT00000032930.3
    Conserved Domains (2) summary
    smart00389
    Location:29 → 84
    HOX; Homeodomain
    cd00086
    Location:468 → 524
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_014729019.2 → XP_014584505.1  highly divergent homeobox isoform X2

    UniProtKB/TrEMBL
    A0A3Q2H0L7
    Related
    ENSECAP00000022404.3, ENSECAT00000026812.4
    Conserved Domains (2) summary
    smart00389
    Location:4 → 59
    HOX; Homeodomain
    cd00086
    Location:443 → 499
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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