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SUB1 SUB1 regulator of transcription [ Equus caballus (horse) ]

Gene ID: 100068496, updated on 8-Mar-2024

Summary

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Official Symbol
SUB1provided by VGNC
Official Full Name
SUB1 regulator of transcriptionprovided by VGNC
Primary source
VGNC:VGNC:23741
See related
Ensembl:ENSECAG00000012399
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 21 NC_009164.3 (32791503..32809669, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 21 NC_009164.2 (31767521..31782982, complement)

Chromosome 21 - NC_009164.3Genomic Context describing neighboring genes Neighboring gene natriuretic peptide receptor 3 Neighboring gene uncharacterized LOC111769812 Neighboring gene spermatogenesis-associated protein 31C2-like Neighboring gene uncharacterized LOC111769815

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription initiation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activated RNA polymerase II transcriptional coactivator p15
Names
SUB1 homolog, transcriptional regulator
activated RNA polymerase II transcriptional coactivator p15-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009164.3 Reference EquCab3.0 Primary Assembly

    Range
    32791503..32809669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023625792.1 → XP_023481560.1  activated RNA polymerase II transcriptional coactivator p15

    UniProtKB/TrEMBL
    F6QR51
    Related
    ENSECAP00000010133.3, ENSECAT00000012820.4
    Conserved Domains (1) summary
    pfam02229
    Location:68 → 115
    PC4; Transcriptional Coactivator p15 (PC4)

  2. XM_023625791.1 → XP_023481559.1  activated RNA polymerase II transcriptional coactivator p15

    UniProtKB/TrEMBL
    F6QR51
    Conserved Domains (1) summary
    pfam02229
    Location:68 → 115
    PC4; Transcriptional Coactivator p15 (PC4)
Nucleotide Protein
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