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TMEM170B transmembrane protein 170B [ Equus caballus (horse) ]

Gene ID: 100063959, updated on 8-Mar-2024

Summary

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Official Symbol
TMEM170Bprovided by VGNC
Official Full Name
transmembrane protein 170Bprovided by VGNC
Primary source
VGNC:VGNC:24220
See related
Ensembl:ENSECAG00000008053
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TMEM170B in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (11847356..11930149)
102 previous assembly EquCab2.0 (GCF_000002305.2) 20 NC_009163.2 (11346864..11371811)

Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC111769217 Neighboring gene S-adenosylmethionine decarboxylase proenzyme-like Neighboring gene androgen dependent TFPI regulating protein Neighboring gene HIVEP zinc finger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 170B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009163.3 Reference EquCab3.0 Primary Assembly

    Range
    11847356..11930149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023624460.1 → XP_023480228.1  transmembrane protein 170B

    UniProtKB/TrEMBL
    A0A3Q2HFQ4, A0A9L0T5S6
    Related
    ENSECAP00000082512.1, ENSECAT00000140666.1
    Conserved Domains (1) summary
    pfam10190
    Location:100 → 204
    Tmemb_170; Putative transmembrane protein 170

RNA

  1. XR_002802126.1 RNA Sequence

    Related
    ENSECAT00000108895.1

  2. XR_002802127.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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