U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FRA10AC1 FRA10A associated CGG repeat 1 [ Equus caballus (horse) ]

Gene ID: 100061742, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
FRA10AC1provided by VGNC
Official Full Name
FRA10A associated CGG repeat 1provided by VGNC
Primary source
VGNC:VGNC:52388
See related
Ensembl:ENSECAG00000000030
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
FRA10AC1-1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (35567460..35602548)
102 previous assembly EquCab2.0 (GCF_000002305.2) 1 NC_009144.2 (35395189..35430256)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member G1 Neighboring gene leucine rich glioma inactivated 1 Neighboring gene phosphodiesterase 6C Neighboring gene retinol binding protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein FRA10AC1
Names
FRA10AC1-like protein
Protein FRA10AC1-like protein
fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308964.1 → NP_001295893.1  protein FRA10AC1

    See identical proteins and their annotated locations for NP_001295893.1

    Status: VALIDATED

    Source sequence(s)
    JL640402, PJAA01000002
    UniProtKB/TrEMBL
    A0A9L0T6C1, K9KFC9
    Related
    ENSECAP00000000039.2, ENSECAT00000000052.4
    Conserved Domains (1) summary
    pfam09725
    Location:104 → 216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    35567460..35602548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014732964.2 → XP_014588450.1  protein FRA10AC1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0T6C1, K9KFC9
    Conserved Domains (1) summary
    pfam09725
    Location:104 → 216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

  2. XM_023640290.1 → XP_023496058.1  protein FRA10AC1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0T6C1, K9KFC9
    Related
    ENSECAP00000077659.1, ENSECAT00000145779.1
    Conserved Domains (1) summary
    pfam09725
    Location:104 → 216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

  3. XM_014732965.2 → XP_014588451.1  protein FRA10AC1 isoform X2

    UniProtKB/TrEMBL
    A0A9L0RRY6, A0A9L0T6C1
    Related
    ENSECAP00000065360.1, ENSECAT00000126078.1
    Conserved Domains (1) summary
    pfam09725
    Location:104 → 216
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

  4. XM_023640361.1 → XP_023496129.1  protein FRA10AC1 isoform X3

    Conserved Domains (1) summary
    pfam09725
    Location:104 → 209
    Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

RNA

  1. XR_002807801.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.