U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL11A2 collagen type XI alpha 2 chain [ Equus caballus (horse) ]

Gene ID: 100061226, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
COL11A2provided by VGNC
Official Full Name
collagen type XI alpha 2 chainprovided by VGNC
Primary source
VGNC:VGNC:16722
See related
Ensembl:ENSECAG00000029028
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See COL11A2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
67
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (34514630..34543863, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 20 NC_009163.2 (33604897..33634218, complement)

Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene bromodomain containing 2 Neighboring gene HLA class II histocompatibility antigen, DO alpha chain Neighboring gene retinoid X receptor beta Neighboring gene solute carrier family 39 member 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-2(XI) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009163.3 Reference EquCab3.0 Primary Assembly

    Range
    34514630..34543863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001917981.5 → XP_001918016.3  collagen alpha-2(XI) chain isoform X9

    UniProtKB/TrEMBL
    A0A9L0R6V7
    Related
    ENSECAP00000058591.1, ENSECAT00000082669.1
    Conserved Domains (4) summary
    pfam01391
    Location:547 → 603
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1433 → 1628
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    cl26386
    Location:1189 → 1374
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_023624701.1 → XP_023480469.1  collagen alpha-2(XI) chain isoform X8

    UniProtKB/TrEMBL
    A0A9L0R6V7
    Conserved Domains (3) summary
    pfam01391
    Location:568 → 624
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1454 → 1649
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains

  3. XM_023624698.1 → XP_023480466.1  collagen alpha-2(XI) chain isoform X5

    UniProtKB/TrEMBL
    A0A1W1GCJ4, A0A9L0RY72
    Related
    ENSECAP00000068775.1, ENSECAT00000106292.1
    Conserved Domains (5) summary
    pfam01391
    Location:628 → 684
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1514 → 1709
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:339 → 687
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl26386
    Location:1270 → 1455
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  4. XM_023624697.1 → XP_023480465.1  collagen alpha-2(XI) chain isoform X4

    UniProtKB/TrEMBL
    A0A9L0R6V7, A0A9L0RX41
    Related
    ENSECAP00000067242.1, ENSECAT00000123332.1
    Conserved Domains (4) summary
    pfam01391
    Location:631 → 687
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1517 → 1712
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam16228
    Location:219 → 353
    DUF4887; Domain of unknown function (DUF4887)

  5. XM_023624695.1 → XP_023480463.1  collagen alpha-2(XI) chain isoform X3

    UniProtKB/TrEMBL
    A0A5F5Q1N1, A0A9L0R6V7
    Related
    ENSECAP00000054429.2, ENSECAT00000073096.2
    Conserved Domains (4) summary
    pfam01391
    Location:652 → 708
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1538 → 1733
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam16228
    Location:219 → 356
    DUF4887; Domain of unknown function (DUF4887)

  6. XM_023624693.1 → XP_023480461.1  collagen alpha-2(XI) chain isoform X1

    UniProtKB/TrEMBL
    A0A1W1GCJ4, A0A9L0SVZ6
    Related
    ENSECAP00000078149.1, ENSECAT00000106053.1
    Conserved Domains (5) summary
    pfam01391
    Location:712 → 768
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1598 → 1793
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam16228
    Location:219 → 356
    DUF4887; Domain of unknown function (DUF4887)
    cl26386
    Location:274 → 662
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  7. XM_023624700.1 → XP_023480468.1  collagen alpha-2(XI) chain isoform X7

    UniProtKB/TrEMBL
    A0A5F5PK58, A0A9L0R6V7
    Related
    ENSECAP00000048682.2, ENSECAT00000074371.2
    Conserved Domains (4) summary
    pfam01391
    Location:573 → 629
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1459 → 1654
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    cl26386
    Location:1215 → 1400
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  8. XM_023624699.1 → XP_023480467.1  collagen alpha-2(XI) chain isoform X6

    UniProtKB/TrEMBL
    A0A9L0R6V7, A0A9L0S9H2
    Related
    ENSECAP00000072793.1, ENSECAT00000140622.1
    Conserved Domains (4) summary
    pfam01391
    Location:594 → 650
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1480 → 1675
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    cl26386
    Location:1236 → 1421
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  9. XM_023624694.1 → XP_023480462.1  collagen alpha-2(XI) chain isoform X2

    UniProtKB/TrEMBL
    A0A1W1GCJ4
    Related
    ENSECAP00000053567.2, ENSECAT00000078867.2
    Conserved Domains (5) summary
    pfam01391
    Location:654 → 710
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1540 → 1735
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:365 → 713
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl26386
    Location:1296 → 1481
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.