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CHKA choline kinase alpha [ Equus caballus (horse) ]

Gene ID: 100059839, updated on 8-Mar-2024

Summary

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Official Symbol
CHKAprovided by VGNC
Official Full Name
choline kinase alphaprovided by VGNC
Primary source
VGNC:VGNC:16501
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (31149327..31201613, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 12 NC_009155.2 (27435573..27474145, complement)

Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase core subunit S8 Neighboring gene T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 Neighboring gene lysine methyltransferase 5B Neighboring gene uncharacterized LOC102148870 Neighboring gene chromosome 12 C11orf24 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009155.3 Reference EquCab3.0 Primary Assembly

    Range
    31149327..31201613 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023654590.1 → XP_023510358.1  choline kinase alpha isoform X2

    Conserved Domains (1) summary
    cd05156
    Location:119 → 460
    ChoK_euk; Euykaryotic Choline Kinase

  2. XM_023654592.1 → XP_023510360.1  choline kinase alpha isoform X4

    Conserved Domains (1) summary
    cd05156
    Location:119 → 442
    ChoK_euk; Euykaryotic Choline Kinase

  3. XM_023654593.1 → XP_023510361.1  choline kinase alpha isoform X5

    Conserved Domains (1) summary
    cl21453
    Location:119 → 363
    PKc_like; Protein Kinases, catalytic domain

  4. XM_023654589.1 → XP_023510357.1  choline kinase alpha isoform X1

    Conserved Domains (1) summary
    cd05156
    Location:119 → 419
    ChoK_euk; Euykaryotic Choline Kinase

  5. XM_023654591.1 → XP_023510359.1  choline kinase alpha isoform X3

    Conserved Domains (1) summary
    cd05156
    Location:119 → 401
    ChoK_euk; Euykaryotic Choline Kinase
Nucleotide Protein
Heading Accession and Version

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