U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SLITRK2 SLIT and NTRK like family member 2 [ Equus caballus (horse) ]

Gene ID: 100055684, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SLITRK2provided by VGNC
Official Full Name
SLIT and NTRK like family member 2provided by VGNC
Primary source
VGNC:VGNC:23301
See related
Ensembl:ENSECAG00000020489
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: X
Exon count:
5
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (119783749..119796185)
102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (115741742..115749035)

Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene ferritin light chain pseudogene Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene uncharacterized LOC111771641 Neighboring gene microRNA mir-9143 Neighboring gene microRNA mir-8908d-2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SLIT and NTRK-like protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009175.3 Reference EquCab3.0 Primary Assembly

    Range
    119783749..119796185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023633314.1 → XP_023489082.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_023633317.1 → XP_023489085.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  3. XM_023633312.1 → XP_023489080.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  4. XM_023633316.1 → XP_023489084.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  5. XM_023633313.1 → XP_023489081.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Related
    ENSECAP00000081643.1, ENSECAT00000066742.2
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  6. XM_023633310.1 → XP_023489078.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Related
    ENSECAP00000069023.1, ENSECAT00000148369.1
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  7. XM_023633315.1 → XP_023489083.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  8. XM_023633311.1 → XP_023489079.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    F7BY37
    Related
    ENSECAP00000086086.1, ENSECAT00000128229.1
    Conserved Domains (5) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 509
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:399 → 459
    LRR_8; Leucine rich repeat
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous