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SCAND3 SCAN domain containing 3 [ Equus caballus (horse) ]

Gene ID: 100052151, updated on 8-Mar-2024

Summary

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Official Symbol
SCAND3provided by VGNC
Official Full Name
SCAN domain containing 3provided by VGNC
Primary source
VGNC:VGNC:25129
See related
Ensembl:ENSECAG00000018074
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
ZBED9; ZNF452
Orthologs
human all
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Genomic context

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Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (27971599..27998013, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 20 NC_009163.2 (27071743..27092757, complement)

Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene transfer RNA serine (anticodon GCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SCAN domain-containing protein 3
Names
zinc finger BED-type containing 9
zinc finger protein 452

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009163.3 Reference EquCab3.0 Primary Assembly

    Range
    27971599..27998013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001504878.4 → XP_001504928.1  SCAN domain-containing protein 3

    UniProtKB/TrEMBL
    A0A9L0SZ07, F6S057
    Related
    ENSECAP00000015629.1, ENSECAT00000019109.3
    Conserved Domains (3) summary
    smart00431
    Location:48 → 160
    SCAN; leucine rich region
    pfam02023
    Location:49 → 136
    SCAN; SCAN domain
    pfam05699
    Location:1239 → 1296
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
Nucleotide Protein
Heading Accession and Version

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