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GGPS1 geranylgeranyl diphosphate synthase 1 [ Equus caballus (horse) ]

Gene ID: 100050954, updated on 8-Mar-2024

Summary

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Official Symbol
GGPS1provided by VGNC
Official Full Name
geranylgeranyl diphosphate synthase 1provided by VGNC
Primary source
VGNC:VGNC:18327
See related
Ensembl:ENSECAG00000017806
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (76978962..76989947, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 1 NC_009144.2 (75998550..76009149, complement)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene G protein subunit gamma 4 Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2 Neighboring gene tubulin folding cofactor E Neighboring gene proline-rich protein 2-like Neighboring gene AT-rich interaction domain 4B Neighboring gene uncharacterized LOC111774659 Neighboring gene RNA binding motif protein 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    76978962..76989947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023647171.1 → XP_023502939.1  geranylgeranyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    K9K4F1
    Conserved Domains (1) summary
    pfam00348
    Location:15 → 244
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_023647165.1 → XP_023502933.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    F6SQ75, K9K4F1
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 250
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_023647175.1 → XP_023502943.1  geranylgeranyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    K9K4F1
    Conserved Domains (1) summary
    pfam00348
    Location:15 → 244
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_023647160.1 → XP_023502928.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    F6SQ75, K9K4F1
    Related
    ENSECAP00000015335.1, ENSECAT00000018777.4
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 250
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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