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UBQLN2 ubiquilin 2 [ Equus caballus (horse) ]

Gene ID: 100050402, updated on 8-Mar-2024

Summary

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Gene symbol
UBQLN2
Gene description
ubiquilin 2
Gene type
protein coding
RefSeq status
INFERRED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See UBQLN2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (46769824..46773224)
102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (42841598..42844998)

Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 8 Neighboring gene microRNA mir-9058b Neighboring gene BTB/POZ domain-containing protein KCTD12-like Neighboring gene negative regulator of P-body association-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquilin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256912.1 → NP_001243841.1  ubiquilin-2

    See identical proteins and their annotated locations for NP_001243841.1

    Status: INFERRED

    Source sequence(s)
    PJAA01000001
    UniProtKB/TrEMBL
    A0A9L0RF00
    Conserved Domains (4) summary
    smart00727
    Location:386 → 430
    STI1; Heat shock chaperonin-binding motif
    cd01808
    Location:33 → 103
    hPLIC_N; Ubiquitin-like domain of hPLIC-1 and hPLIC2
    smart00213
    Location:33 → 103
    UBQ; Ubiquitin homologues
    cd14399
    Location:585 → 624
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009175.3 Reference EquCab3.0 Primary Assembly

    Range
    46769824..46773224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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