MBD5 methyl-CpG binding domain protein 5 [Equus caballus (horse)] - Gene

Summary

Official Symbol: MBD5provided by VGNC
Official Full Name: methyl-CpG binding domain protein 5provided by VGNC
Primary source: VGNC:VGNC:20008
See related: Ensembl:ENSECAG00000024839
Gene type: protein coding
RefSeq status: MODEL
Organism: Equus caballus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
103	current	EquCab3.0 (GCF_002863925.1)	18	NC_009161.3 (30860294..31061578)
102	previous assembly	EquCab2.0 (GCF_000002305.2)	18	NC_009161.2 (30829649..31027329)

Chromosome 18 - NC_009161.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH92574 (e-PCR)
- UniSTS:90810

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables chromatin binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in chromocenter	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: methyl-CpG-binding domain protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

NC_009161.3 Reference EquCab3.0 Primary Assembly

Range

30860294..31061578

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_023622554.1 → XP_023478322.1 methyl-CpG-binding domain protein 5 isoform X1

UniProtKB/TrEMBL

A0A9L0RKD8, F6QX54

Conserved Domains (2) summary

cl00110
Location:21 → 79

MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

cl02554
Location:1621 → 1698

PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
XM_005601478.3 → XP_005601535.1 methyl-CpG-binding domain protein 5 isoform X1

See identical proteins and their annotated locations for XP_005601535.1

UniProtKB/TrEMBL

A0A9L0RKD8, F6QX54

Related

ENSECAP00000067963.1, ENSECAT00000130551.1

Conserved Domains (2) summary

cl00110
Location:21 → 79

MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

cl02554
Location:1621 → 1698

PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
XM_014732456.2 → XP_014587942.1 methyl-CpG-binding domain protein 5 isoform X1

UniProtKB/TrEMBL

A0A9L0RKD8, F6QX54

Related

ENSECAP00000022391.1, ENSECAT00000026798.4

Conserved Domains (2) summary

cl00110
Location:21 → 79

MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

cl02554
Location:1621 → 1698

PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
XM_023622555.1 → XP_023478323.1 methyl-CpG-binding domain protein 5 isoform X2

UniProtKB/TrEMBL

F6QX07

Related

ENSECAP00000022396.3, ENSECAT00000026803.3

Conserved Domains (2) summary

cl00110
Location:21 → 79

MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

cl02554
Location:1388 → 1465

PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...