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etgase embryonic transglutaminase [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100049464, updated on 4-Jul-2015
Gene symbol
etgase
Gene description
embryonic transglutaminase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
F13a1
See etgase in MapViewer
Location:
chromosome: 18
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM31367v1 (GCF_000313675.1) 18 NC_019876.1 (19489798..19503099)

Chromosome 18 - NC_019876.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 53 Neighboring gene trichohyalin-like Neighboring gene poly [ADP-ribose] polymerase 14-like Neighboring gene uncharacterized LOC105356434

Genomic Sequence:
NC_019876.1 Chromosome 18 Reference ASM31367v1 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104830.1NP_001098300.1  embryonic transglutaminase

    See identical proteins and their annotated locations for NP_001098300.1

    Status: PROVISIONAL

    Source sequence(s)
    AB116366
    UniProtKB/TrEMBL
    Q764P8
    Conserved Domains (3) summary
    smart00460
    Location:324415
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:62182
    Transglut_N; Transglutaminase family
    pfam00927
    Location:641738
    Transglut_C; Transglutaminase family, C-terminal ig like domain

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31367v1 Primary Assembly

Genomic

  1. NC_019876.1 Reference ASM31367v1 Primary Assembly

    Range
    19489798..19503099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011487495.1XP_011485797.1  

    See identical proteins and their annotated locations for XP_011485797.1

    Conserved Domains (3) summary
    smart00460
    Location:324415
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:62182
    Transglut_N; Transglutaminase family
    pfam00927
    Location:642739
    Transglut_C; Transglutaminase family, C-terminal ig like domain
  2. XM_011487496.1XP_011485798.1  

    See identical proteins and their annotated locations for XP_011485798.1

    Conserved Domains (3) summary
    smart00460
    Location:324415
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:62182
    Transglut_N; Transglutaminase family
    pfam00927
    Location:642739
    Transglut_C; Transglutaminase family, C-terminal ig like domain