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st6gal1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100049380, updated on 8-Mar-2024

Summary

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Gene symbol
st6gal1
Gene description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
See related
EnsemblRapid:ENSORLG00000026366
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
siat1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (30191642..30207220, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095187.1 (105308..121305, complement)

Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene hexokinase-2 Neighboring gene ubiquitin interaction motif containing 1 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene neutrophil cytosolic factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactoside alpha-2,6-sialyltransferase 1
Names
ST6 beta-galactoside alpha-2,6-sialyltransferase 1
alpha 2,6 sialyltransferase I
NP_001098241.1
XP_011471564.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104771.1 → NP_001098241.1  beta-galactoside alpha-2,6-sialyltransferase 1

    See identical proteins and their annotated locations for NP_001098241.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ871600
    UniProtKB/TrEMBL
    A0A3P9K7K6, Q5K028
    Related
    ENSORLP00000089522.1, ENSORLT00000104967.1
    Conserved Domains (1) summary
    pfam00777
    Location:242 → 478
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019872.2 Reference ASM223467v1 Primary Assembly

    Range
    30191642..30207220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011473262.3 → XP_011471564.1  beta-galactoside alpha-2,6-sialyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_011471564.1

    UniProtKB/TrEMBL
    A0A3B3I8W4, A0A3P9LTW3
    Related
    ENSORLP00000040572.1, ENSORLT00000026870.2
    Conserved Domains (1) summary
    pfam00777
    Location:231 → 467
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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