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znf605 zinc finger protein 605 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100036625, updated on 11-Apr-2024

Summary

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Official Symbol
znf605provided by Xenbase
Official Full Name
zinc finger protein 605provided by Xenbase
Primary source
Xenbase:XB-GENE-5942644
See related
Ensembl:ENSXETG00000003817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (876934..893116, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683921.1 (16399..33453, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene acid-sensing ion channel 1C-like Neighboring gene zinc finger protein 436-like Neighboring gene kelch like family member 10 Neighboring gene zinc finger protein 271-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in branched-chain amino acid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in response to nutrient IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 605

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097184.1 → NP_001090653.1  zinc finger protein 605

    See identical proteins and their annotated locations for NP_001090653.1

    Status: PROVISIONAL

    Source sequence(s)
    BC127284
    UniProtKB/TrEMBL
    A0A803JCH0, A0JP79, F7A8Z4
    Related
    ENSXETP00000116687.1, ENSXETT00000108929.1
    Conserved Domains (4) summary
    PTZ00121
    Location:1740 → 2001
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:95 → 490
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:1282 → 1704
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1514 → 1534
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    876934..893116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903139.1 → XP_031758999.1  zinc finger protein 605 isoform X2

    UniProtKB/TrEMBL
    A0A803JCH0, A0A8J1JM96
    Conserved Domains (4) summary
    PTZ00121
    Location:1732 → 1931
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:95 → 490
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:1282 → 1704
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1514 → 1534
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_031903138.1 → XP_031758998.1  zinc finger protein 605 isoform X1

    UniProtKB/TrEMBL
    A0A803JCH0, A0JP79, F7A8Z4
    Conserved Domains (4) summary
    PTZ00121
    Location:1740 → 2001
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:95 → 490
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:1282 → 1704
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:1514 → 1534
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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