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OTX1 orthodenticle homeobox 1 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100031880, updated on 8-Mar-2024

Summary

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Gene symbol
OTX1
Gene description
orthodenticle homeobox 1
See related
Ensembl:ENSMODG00000037978
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See OTX1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 1 NC_077227.1 (638793577..638802096, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 1 NC_008801.1 (629232777..629241354, complement)

Chromosome 1 - NC_077227.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose pyrophosphorylase 2 Neighboring gene malate dehydrogenase 1 Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene EH domain binding protein 1 Neighboring gene uncharacterized LOC130456568 Neighboring gene transmembrane protein 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein OTX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077227.1 Reference mMonDom1.pri

    Range
    638793577..638802096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001374882.3 → XP_001374919.2  homeobox protein OTX1

    UniProtKB/TrEMBL
    A0A5F8G3F7
    Related
    ENSMODP00000041999.1
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:209 → 288
    TF_Otx; Otx1 transcription factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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