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IFT46 intraflagellar transport 46 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100031426, updated on 3-Apr-2024

Summary

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Gene symbol
IFT46
Gene description
intraflagellar transport 46
See related
Ensembl:ENSMODG00000013439
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 4 NC_077230.1 (231862390..231894053)
103 previous assembly MonDom5 (GCF_000002295.2) 4 NC_008804.1 (231469662..231497922)

Chromosome 4 - NC_077230.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology like domain family B member 1 Neighboring gene archain 1 Neighboring gene centrosomal protein 20-like Neighboring gene transmembrane protein 25 Neighboring gene tetratricopeptide repeat domain 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 46 homolog
Names
intraflagellar transport 46 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077230.1 Reference mMonDom1.pri

    Range
    231862390..231894053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007494702.3 → XP_007494764.1  intraflagellar transport protein 46 homolog isoform X10

    UniProtKB/TrEMBL
    F7G9W3
    Related
    ENSMODP00000059891.1
    Conserved Domains (1) summary
    pfam12317
    Location:115 → 317
    IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

  2. XM_056794309.1 → XP_056650287.1  intraflagellar transport protein 46 homolog isoform X9

    UniProtKB/TrEMBL
    A0A5F8HK44

  3. XM_001380657.5 → XP_001380694.3  intraflagellar transport protein 46 homolog isoform X8

    UniProtKB/TrEMBL
    A0A5F8GSD3, F7G9W3
    Related
    ENSMODP00000050553.1
    Conserved Domains (1) summary
    pfam12317
    Location:169 → 371
    IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

  4. XM_056794308.1 → XP_056650286.1  intraflagellar transport protein 46 homolog isoform X6

    UniProtKB/TrEMBL
    A0A5F8GIZ9

  5. XM_056794305.1 → XP_056650283.1  intraflagellar transport protein 46 homolog isoform X4

  6. XM_056794306.1 → XP_056650284.1  intraflagellar transport protein 46 homolog isoform X4

  7. XM_056794304.1 → XP_056650282.1  intraflagellar transport protein 46 homolog isoform X3

  8. XM_056794303.1 → XP_056650281.1  intraflagellar transport protein 46 homolog isoform X1

  9. XM_007494697.3 → XP_007494759.1  intraflagellar transport protein 46 homolog isoform X2

    UniProtKB/TrEMBL
    F7G9W3
    Related
    ENSMODP00000016807.4
    Conserved Domains (1) summary
    pfam12317
    Location:234 → 436
    IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

  10. XM_056794307.1 → XP_056650285.1  intraflagellar transport protein 46 homolog isoform X5

  11. XM_007494701.3 → XP_007494763.1  intraflagellar transport protein 46 homolog isoform X7

    UniProtKB/TrEMBL
    F7G9W3
    Conserved Domains (1) summary
    pfam12317
    Location:183 → 385
    IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal
Nucleotide Protein
Heading Accession and Version

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