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MODO-UE MHC class I antigen [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100026178, updated on 3-Apr-2024

Summary

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Gene symbol
MODO-UE
Gene description
MHC class I antigen
See related
Ensembl:ENSMODG00000014624
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
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Genomic context

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See MODO-UE in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 2 NC_077228.1 (268322920..268327629, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 2 NC_008802.1 (269509621..269517775, complement)

Chromosome 2 - NC_077228.1Genomic Context describing neighboring genes Neighboring gene rano class II histocompatibility antigen, A beta chain-like Neighboring gene U6 spliceosomal RNA Neighboring gene MHC class I antigen Neighboring gene patr class I histocompatibility antigen, A-2 alpha chain-like Neighboring gene antigen peptide transporter 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of the opossum major histocompatibility complex: evidence for diverse alternative splice patterns and low polymorphism among class I genes. Baker ML, et al. Immunology, 2009 Sep. PMID 19191910, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MHC class I antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171835.1 → NP_001165306.1  MHC class I antigen precursor

    See identical proteins and their annotated locations for NP_001165306.1

    Status: PROVISIONAL

    Source sequence(s)
    EU886708
    UniProtKB/TrEMBL
    C6ZIV3, F6YPW4
    Related
    ENSMODP00000018272.3, ENSMODT00000018605.3
    Conserved Domains (3) summary
    cd07698
    Location:202 → 294
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam06623
    Location:328 → 352
    MHC_I_C; MHC_I C-terminus
    cl08246
    Location:22 → 198
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077228.1 Reference mMonDom1.pri

    Range
    268322920..268327629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056817962.1 → XP_056673940.1  MHC class I antigen

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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