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gbgt1l9 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 9 [ Danio rerio (zebrafish) ]

Gene ID: 100005704, updated on 27-Mar-2024

Summary

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Official Symbol
gbgt1l9provided by ZNC
Official Full Name
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-060531-70
See related
AllianceGenome:ZFIN:ZDB-GENE-060531-70
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-110k5.10
Summary
Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (23720539..23733064, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (23216739..23229263, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 128a Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 1 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 2 Neighboring gene si:ch211-287c22.2, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables glycosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in lipid glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    23720539..23733064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009301419.3 → XP_009299694.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8M3ASD7
    Conserved Domains (1) summary
    cd02515
    Location:74 → 344
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens
Nucleotide Protein
Heading Accession and Version

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