wdr6 WD repeat domain 6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: wdr6provided by ZNC
Official Full Name: WD repeat domain 6provided by ZNC
Primary source: ZFIN:ZDB-GENE-081104-368
See related: Ensembl:ENSDARG00000078571 AllianceGenome:ZFIN:ZDB-GENE-081104-368
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-20d21.7
Summary: Predicted to be involved in tRNA methylation. Predicted to be active in cytoplasm. Orthologous to human WDR6 (WD repeat domain 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (26230054..26240507)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (26210926..26221354)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in tRNA methylation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: WD repeat-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001113654.1 → NP_001107126.1 WD repeat-containing protein 6

Status: PROVISIONAL

Source sequence(s)

CR847503

UniProtKB/TrEMBL

A0A8M1NH67, A9C3T6

Related

ENSDARP00000113761.1, ENSDART00000140798.3

Conserved Domains (3) summary

COG2319
Location:52 → 506

WD40; WD40 repeat [General function prediction only]

sd00039
Location:222 → 269

7WD40; WD40 repeat [structural motif]

cl02567
Location:209 → 491

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007119.7 Reference GRCz11 Primary Assembly

Range

26230054..26240507

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005166979.4 → XP_005167036.1 WD repeat-containing protein 6 isoform X1

UniProtKB/TrEMBL

A0A8M2BEZ5

Conserved Domains (3) summary

COG2319
Location:63 → 517

WD40; WD40 repeat [General function prediction only]

sd00039
Location:233 → 280

7WD40; WD40 repeat [structural motif]

cl02567
Location:220 → 502

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...