U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

prdm8a PR/SET domain 8a [ Danio rerio (zebrafish) ]

Gene ID: 100004079, updated on 27-Mar-2024

Summary

Official Symbol
prdm8aprovided by ZNC
Official Full Name
PR/SET domain 8aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-320
See related
AllianceGenome:ZFIN:ZDB-GENE-091204-320
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkeyp-41f9.4
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in oligodendrocyte development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (9185264..9191817, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (9351706..9358885, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate proteoglycan 4-like Neighboring gene RasGEF domain family, member 1Bb Neighboring gene ANTXR cell adhesion molecule 2b Neighboring gene progestin and adipoQ receptor family member IIIb

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in oligodendrocyte development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
PR domain zinc finger protein 8-like
Names
PR domain containing 8a

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    9185264..9191817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479262.1XP_021334937.1  PR domain zinc finger protein 8-like isoform X1

    UniProtKB/TrEMBL
    A0A8M9PTU4
    Conserved Domains (2) summary
    sd00017
    Location:407427
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00856
    Location:38129
    SET; SET domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394769.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    242457..249098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001343438.6XP_001343474.4  PR domain zinc finger protein 8-like isoform X2

    UniProtKB/TrEMBL
    A0A8M1Q7S8
    Conserved Domains (2) summary
    sd00017
    Location:401421
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00856
    Location:32123
    SET; SET domain