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lyrm7 LYR motif containing 7 [ Danio rerio (zebrafish) ]

Gene ID: 100002948, updated on 27-Mar-2024

Summary

Official Symbol
lyrm7provided by ZNC
Official Full Name
LYR motif containing 7provided by ZNC
Primary source
ZFIN:ZDB-GENE-070615-32
See related
Ensembl:ENSDARG00000079815 AllianceGenome:ZFIN:ZDB-GENE-070615-32
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:165597
Summary
Predicted to be located in mitochondrial matrix. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 8. Orthologous to human LYRM7 (LYR motif containing 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (4964515..4969188)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (4964211..4968884)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene sorting nexin family member 30 Neighboring gene si:ch73-234b20.4 Neighboring gene methionine adenosyltransferase II, alpha-like Neighboring gene si:ch73-234b20.5

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC165597

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables protein folding chaperone IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in mitochondrial respiratory chain complex III assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within mitochondrial respiratory chain complex III assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
complex III assembly factor LYRM7
Names
LYR motif-containing protein 7
Lyrm7 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098759.1NP_001092229.1  complex III assembly factor LYRM7

    See identical proteins and their annotated locations for NP_001092229.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142889
    UniProtKB/Swiss-Prot
    A5PLG0
    Related
    ENSDARP00000099103.3, ENSDART00000109882.4
    Conserved Domains (1) summary
    pfam05347
    Location:660
    Complex1_LYR; Complex 1 protein (LYR family)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    4964515..4969188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394763.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    18743..23417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395286.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    13118..17791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)