H3K9me1 - Human fibroblast, IMR90 cell line, lung, fetus
ESX000000580 - Experiment
Genome track
| Track name: | renlab.H3K9me3.IMR90-02.01.hg19.level.2 |
| Genome release: | |
| Accession number: | NA000004991.1 |
| File type: | WIG |
| File: | |
DownloadView on Genome
Experimental details
| Feature: | H3K9me1 |
| Antibody: | Abcam 8896 |
| Technique: | ChIP-seq |
| Instrument: | Illumina Genome Analyzer II |
| Assay Type: | histone modification |
Quality Metrics
| FindPeaks Score: | 0.3807 |
| FindPeaks Percentile: | 93 |
| Hotspot Score: | 0.1913 |
| Hotspot Percentile: | 64 |
| IROC Score: | 0.8428 |
| IROC Percentile: | 56 |
| Poisson Score: | 0.4709 |
| Poisson Percentile: | 80 |
Sample
Human fibroblast, IMR90 cell line, lung, fetus
Homo sapiens. Features assayed include DNA methylation, Digital Genomic Footprinting, H2A.Z, H2AK5ac, H2AK9ac, H2BK120ac, H2BK12ac, H2BK15ac, H2BK20ac, H2BK5ac, H3K14ac, H3K18ac, H3K23ac, H3K27ac, H3K27me3, H3K36me3, H3K4ac, H3K4me1, H3K4me2, H3K4me3, H3K56ac, H3K79me1, H3K79me2, H3K9ac, H3K9me1, H3K9me3, H4K20me1, H4K5ac, H4K8ac, H4K91ac, chromatin accessibility, gene expression, small RNA analysis. Data from the Roadmap Epigenomics project.
Study
Human Reference Epigenome Mapping Project
Characterization of the reference epigenome in humans by use of ChIP-Seq in a diverse panel of ES cells, tissue stem cells, reprogrammed stem cells, primary cells and tissues. Histone modifications and DNA methylation will be examined.
Data submission
UCSD Human Reference Epigenome Mapping Project
The human embryonic stem cells (hESCs) are a unique model system for investigating the mechanisms of human development due to their ability to replicate indefinitely while retaining the capacity to differentiate into a host of functionally distinct cell types. In addition, these cells could be pote...
University of California, San Diego. Public on: Aug 03 2009
GSM521913 - GEOSRA
Reference
The NIH Roadmap Epigenomics Mapping Consortium.
Bernstein BE, et al. Nat Biotechnol. 2010 Oct;28(10):1045-8. - Similar
PMID: 20944595 -
Citation
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.
Hawkins RD, et al. Cell Stem Cell. 2010 May 7;6(5):479-91. - Similar
PMID: 20452322 -
Citation
Human DNA methylomes at base resolution show widespread epigenomic differences.
Lister R, et al. Nature. 2009 Nov 19;462(7271):315-22. - Similar
PMID: 19829295 -
Citation
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
Lister R, et al. Nature. 2011 Mar 3;471(7336):68-73. - Similar
PMID: 21289626 -
Citation