Entrez

PubMed

Nucleotide

Protein

Genome

Structure

PMC

Journals

Books


Entrez Database ESummary Fields
Last update: April 19, 2006

The following list of fields is returned by ESummary for each listed Entrez database. The field name is returned in the Name attribute and it's field type (String, Integer, Date, List) is returned in the Type attribute.

pubmed

1.    PubDate - Date

2.    EPubDate - Date

3.    Source - String

4.    AuthorList – List   

            a) Author - String

            b) CollectiveName - String

5.    LastAuthor - String

6.    Title – String

7.    Volume - String

8.    Issue – String

9.    Pages - String

10.  LangList – List

            a) Lang - String

11.  NlmUniqueID – String

12.  ISSN – String

13.  ESSN – String

14.  PubTypeList – List

            a) PubType – String

15.  RecordStatus - String

16.  PubStatus – String (aheadofprint, ppublish, epublish, etc.)

17. ArticleIds – List

            a) doi - String  

            b) pii – String

            c) pubmed – String

            d) medline - String

18.  DOI – String

19.  History – List

            a) received - Date

            b) accepted - Date

            c) aheadofprint - Date

            d) pubmed - Date

            e) medline - Date

20.  References - List

            Types - String

21.  HasAbstract - Integer

22.  PmcRefCount - Integer

23. FullJournalName - String

24. SO - String

 

           

 

protein

  1. Caption - String
  2. Title - String
  3. Extra - String
  4. Gi - Integer
  5. CreateDate - String
  6. UpdateDate - String
  7. Flags - Integer
  8. TaxId - Integer

nucleotide

  1. Caption - String
  2. Title - String
  3. Extra - String
  4. Gi - Integer
  5. CreateDate - String
  6. UpdateDate - String
  7. Flags - Integer
  8. TaxId - Integer

popset

  1. Caption - String
  2. Title - String
  3. Extra - String
  4. Gi - Integer
  5. CreateDate - String
  6. UpdateDate - String
  7. Flags - Integer
  8. TaxId - Integer

taxonomy

  1. Rank - String
  2. Division - String
  3. ScientificName - String
  4. CommonName - String
  5. TaxId - Integer
  6. NucNumber - Integer
  7. ProtNumber - Integer
  8. StructNumber - Integer
  9. GenNumber - Integer

genome

  1. Caption - String
  2. Title - String
  3. Extra - String
  4. Gi - Integer
  5. CreateDate - String
  6. UpdateDate - String
  7. Flags - Integer
  8. TaxId - Integer

omim

  1. Oid - String
  2. Title - String
  3. AltTitles - String
  4. Locus - String

structure

  1. Caption - String
  2. Title - String
  3. Extra - String
  4. TaxId - Integer
  5. Sda - Integer
  6. Gi - Integer

domains

  1. Caption - String
  2. Title - String
  3. Extra - String
  4. TaxId - Integer
  5. Sda - Integer
  6. Gi - Integer

probeset

  1. Accession1 - String
  2. Accession2 - String
  3. Title1 - String
  4. Title2 - String
  5. ShortDescription1 - String
  6. ShortDescription2 - String
  7. TargetSrc - String
  8. TargetRef - String
  9. Organism - String
  10. Author - String
  11. Type - String
  12. Subtype - String
  13. PubDate - Date

books

  1. Title - String
  2. PubDate - Date
  3. ID - String
  4. Book - String
  5. Parents - String
  6. Type - String
  7. RID - String

cdd

  1. Accession - String
  2. Title - String
  3. Abstract - String

unists

  1. Marker_Title - String
  2. Summary - String
  3. LocusId - String

snp

  1. SNP_ID - Integer
  2. Organism - String
  3. GENE - String
  4. LOCUS_ID - Integer
  5. ACC - String
  6. CHR - String
  7. WEIGHT - Integer
  8. HANDLE - String
  9. FXN_CLASS - String
  10. VALIDATED - String
  11. GTYPE - String
  12. DOCSUM - String
  13. HET - Integer
  14. SRATE - Integer
  15. TAX_ID - Integer
  16. CHRRPT - String
  17. ORIG_BUILD - Integer
  18. UPD_BUILD - Integer
  19. CREATEDATE - String
  20. UPDATEDATE - String
  21. POP_CLASS - String
  22. METHOD_CLASS - String
  23. SNP3D - String
  24. LINKOUT - String
  25. SS - Integer
  26. LOCSNPID - String
  27. ALLELE - String
  28. SNP_CLASS - String
  29. CHRPOS - String
  30. CONTIGPOS - String

journals

  1. Title - String
  2. MedAbbr - String
  3. IsoAbbr - String
  4. NlmId - String
  5. pISSN - String
  6. eISSN - String
  7. PublicationStartYear - String
  8. PublicationEndYear - String
  9. Publisher - String
  10. Language - String
  11. Country - String

unigene

  1. TITLE - String
  2. CHROMOSOME - String
  3. ORGANISM - String
  4. GENE - String
  5. CLUSTERID - String
  6. TAXID - Integer
  7. SEQ_COUNT - Integer
  8. EST_COUNT - Integer