nsv970724
- Organism: Pongo abelii
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Region Size:6,617
- Publication(s):Sudmant et al. 2013
Source: NCBI
Genome View
Select assembly:Overlapping variant regions from other studies: 135 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 135 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 7 studies. See in: genome view
Overlapping variant regions from other studies: 27 SVs from 12 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 28 SVs from 12 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv970724 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nsv970724 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_5 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nsv970724 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_4 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nsv970724 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nsv970724 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nsv970724 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nsv970724 | Remapped | Perfect | GRCh37.p13 | ALT_REF_LOCI_3 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nsv970724 | Remapped | Perfect | GRCh37.p13 | ALT_REF_LOCI_5 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nsv970724 | Remapped | Perfect | GRCh37.p13 | ALT_REF_LOCI_6 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nsv970724 | Remapped | Perfect | GRCh37.p13 | ALT_REF_LOCI_1 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nsv970724 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv2756935 | duplication | Pongo_abelii-KB4361_Dennis | Sequencing | Read depth | 3 | 9,401 |
nssv2757347 | duplication | Pongo_abelii-KB9258_Bubbles | Sequencing | Read depth | 3 | 9,569 |
nssv2758301 | duplication | Pongo_abelii-A953_Vicki | Sequencing | Read depth | 3 | 9,401 |
nssv2759722 | duplication | SAMN01920542 | Sequencing | Read depth | 3 | 9,384 |
nssv2759751 | duplication | SAMN01920544 | Sequencing | Read depth | 3 | 9,385 |
nssv2760986 | duplication | Pongo_abelii-SB550_Sibu | Sequencing | Read depth | 3 | 9,415 |
nssv2766463 | duplication | Pongo_abelii-KB5883_Likoe | Sequencing | Read depth | 3 | 9,397 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv2756935 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2757347 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2758301 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2759722 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2759751 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2760986 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2766463 | Remapped | Perfect | NT_167246.2:g.(?_7 5934)_(82550_?)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 75,934 | 82,550 |
nssv2756935 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2757347 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2758301 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2759722 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2759751 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2760986 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2766463 | Remapped | Perfect | NT_167247.2:g.(?_7 5960)_(82576_?)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 75,960 | 82,576 |
nssv2756935 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2757347 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2758301 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2759722 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2759751 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2760986 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2766463 | Remapped | Perfect | NT_167245.2:g.(?_7 5969)_(82585_?)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 75,969 | 82,585 |
nssv2756935 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2757347 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2758301 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2759722 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2759751 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2760986 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2766463 | Remapped | Perfect | NT_167244.2:g.(?_7 5946)_(82562_?)dup | GRCh38.p12 | Second Pass | NT_167244.2 | Chr6|NT_16 7244.2 | 75,946 | 82,562 |
nssv2756935 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2757347 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2758301 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2759722 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2759751 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2760986 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2766463 | Remapped | Perfect | NC_000006.12:g.(?_ 28810367)_(2881698 3_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,810,367 | 28,816,983 |
nssv2756935 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2756935 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2756935 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2757347 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2757347 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2757347 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2758301 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2758301 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2758301 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2759722 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2759722 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2759722 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2759751 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2759751 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2759751 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2760986 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2760986 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2760986 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2766463 | Remapped | Perfect | NT_167244.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167244.1 | Chr6|NT_16 7244.1 | 81,545 | 88,161 |
nssv2766463 | Remapped | Perfect | NT_167247.1:g.(?_8 1545)_(88161_?)dup NT_167247.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 81,545 | 88,161 |
nssv2766463 | Remapped | Perfect | NT_167248.1:g.(?_8 1545)_(88161_?)dup NT_167248.1:g.(?_8 1545)_(88161_?)dup | GRCh37.p13 | Second Pass | NT_167248.1 | Chr6|NT_16 7248.1 | 81,545 | 88,161 |
nssv2756935 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2757347 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2758301 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2759722 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2759751 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2760986 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2766463 | Remapped | Perfect | NT_167245.1:g.(?_8 1554)_(88170_?)dup NT_167245.1:g.(?_8 1554)_(88170_?)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 81,554 | 88,170 |
nssv2756935 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2757347 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2758301 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2759722 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2759751 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2760986 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2766463 | Remapped | Perfect | NC_000006.11:g.(?_ 28778144)_(2878476 0_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 28,778,144 | 28,784,760 |
nssv2756935 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 | ||
nssv2757347 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 | ||
nssv2758301 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 | ||
nssv2759722 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 | ||
nssv2759751 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 | ||
nssv2760986 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 | ||
nssv2766463 | Submitted genomic | NC_000006.10:g.(?_ 28886123)_(2889273 9_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 28,886,123 | 28,892,739 |