nsv897768
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:126,855
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 454 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 454 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 95 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv897768 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 65,947,739 | 65,954,533 | 66,069,585 | 66,074,593 |
| nsv897768 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 65,715,210 | 65,722,004 | 65,837,056 | 65,842,064 |
| nsv897768 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 65,471,786 | 65,478,580 | 65,593,632 | 65,598,640 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1510023 | copy number loss | SP54956 | SNP array | SNP genotyping analysis | 783 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1510023 | Remapped | Perfect | NC_000011.10:g.(65 947739_65954533)_( 66069585_66074593) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 65,947,739 | 65,954,533 | 66,069,585 | 66,074,593 |
| nssv1510023 | Remapped | Perfect | NC_000011.9:g.(657 15210_65722004)_(6 5837056_65842064)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 65,715,210 | 65,722,004 | 65,837,056 | 65,842,064 |
| nssv1510023 | Submitted genomic | NC_000011.8:g.(654 71786_65478580)_(6 5593632_65598640)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 65,471,786 | 65,478,580 | 65,593,632 | 65,598,640 |