nsv835730

  • Variant Calls:5
  • Validation:Yes
  • Region Size:24,491

Links to Other Resources

Source: NCBI

Genome View

Select assembly:
Remapped(Score: Perfect):59,371,555-59,396,045Question Mark
Submitted genomic59,401,664-59,426,154Question Mark
Remapped(Score: Good):59,676,155-59,700,643Question Mark

Variant Region Placement Information

Variant Region IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrInner StartInner Stop
nsv835730RemappedPerfectBtau_4.6.1Primary AssemblyFirst PassNC_007319.5Chr2159,371,55559,396,045
nsv835730Submitted genomicBtau_4.0 (bosTau4)NC_007319.3Chr2159,401,66459,426,154
nsv835730RemappedGoodBos_taurus_UMD_3.1Primary AssemblyFirst PassAC_000178.1Chr2159,676,15559,700,643

Variant Call Information

Variant Call IDTypeSample IDMethodAnalysisOther Calls in this Sample and Study
nssv1457653copy number gainBTAN1SequencingRead depth778
nssv1458461copy number gainBTAN2SequencingRead depth783
nssv1459260copy number gainBTAN3SequencingRead depth779
nssv1460024copy number gainBTHOSequencingRead depth717
nssv1460679copy number gainDTTRACESequencingRead depth642

Variant Call Placement Information

Variant Call IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrOuter StartInner StartInner StopOuter Stop
nssv1457653RemappedPerfectBtau_4.6.1Primary AssemblyFirst PassNC_007319.5Chr2159,370,55559,371,55559,396,04559,410,276
nssv1458461RemappedPerfectBtau_4.6.1Primary AssemblyFirst PassNC_007319.5Chr2159,370,55559,371,55559,396,04559,410,276
nssv1459260RemappedPerfectBtau_4.6.1Primary AssemblyFirst PassNC_007319.5Chr2159,370,55559,371,55559,396,04559,410,276
nssv1460024RemappedPerfectBtau_4.6.1Primary AssemblyFirst PassNC_007319.5Chr2159,370,55559,371,55559,396,04559,410,276
nssv1460679RemappedPerfectBtau_4.6.1Primary AssemblyFirst PassNC_007319.5Chr2159,370,55559,371,55559,396,04559,410,276
nssv1457653Submitted genomicBtau_4.0 (bosTau4)NC_007319.3Chr2159,400,66459,401,66459,426,15459,440,385
nssv1458461Submitted genomicBtau_4.0 (bosTau4)NC_007319.3Chr2159,400,66459,401,66459,426,15459,440,385
nssv1459260Submitted genomicBtau_4.0 (bosTau4)NC_007319.3Chr2159,400,66459,401,66459,426,15459,440,385
nssv1460024Submitted genomicBtau_4.0 (bosTau4)NC_007319.3Chr2159,400,66459,401,66459,426,15459,440,385
nssv1460679Submitted genomicBtau_4.0 (bosTau4)NC_007319.3Chr2159,400,66459,401,66459,426,15459,440,385
nssv1457653RemappedGoodBos_taurus_UMD_3.1Primary AssemblyFirst PassAC_000178.1Chr2159,675,15559,675,15559,714,87459,714,874
nssv1458461RemappedGoodBos_taurus_UMD_3.1Primary AssemblyFirst PassAC_000178.1Chr2159,675,15559,675,15559,714,87459,714,874
nssv1459260RemappedGoodBos_taurus_UMD_3.1Primary AssemblyFirst PassAC_000178.1Chr2159,675,15559,675,15559,714,87459,714,874
nssv1460024RemappedGoodBos_taurus_UMD_3.1Primary AssemblyFirst PassAC_000178.1Chr2159,675,15559,675,15559,714,87459,714,874
nssv1460679RemappedGoodBos_taurus_UMD_3.1Primary AssemblyFirst PassAC_000178.1Chr2159,675,15559,675,15559,714,87459,714,874

Validation Information

Variant Call IDExperiment IDSample IDMethodAnalysisResult
nssv14584613BTAN2qPCRProbe signal intensityPass
nssv14592603BTAN3qPCRProbe signal intensityPass
nssv14600243BTHOqPCRProbe signal intensityPass

No genotype data were submitted for this variant