nsv1002886
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,905,668
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 36148 SVs from 130 studies. See in: genome view
Overlapping variant regions from other studies: 36151 SVs from 130 studies. See in: genome view
Overlapping variant regions from other studies: 11149 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1002886 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 149,176,221 | 164,081,888 |
| nsv1002886 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 148,894,008 | 163,799,676 |
| nsv1002886 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 150,376,698 | 165,282,370 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis |
|---|---|---|---|---|
| nssv3445491 | copy number loss | 9896078 | Oligo aCGH | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3445491 | Remapped | Perfect | NC_000003.12:g.(?_ 149176221)_(164081 888_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 149,176,221 | 164,081,888 |
| nssv3445491 | Remapped | Perfect | NC_000003.11:g.(?_ 148894008)_(163799 676_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 148,894,008 | 163,799,676 |
| nssv3445491 | Submitted genomic | NC_000003.10:g.(?_ 150376698)_(165282 370_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 150,376,698 | 165,282,370 |