dbVar: Study Browser

Study	Organism	Study Type	Method	Number of Variant Regions	Number of Variant Calls	Publication
nstd1	human	Control Set	Paired-end mapping	297	297	Tuzun et al. 2005
nstd2	human	Control Set	Paired-end mapping	7,458	10,950	Kidd et al. 2008
nstd3	rhesus macaque	Control Set	Oligo aCGH	123	214	Lee et al. 2008
nstd4	human	Control Set	Oligo aCGH	2,949	17,817	Perry et al. 2008
nstd5	mouse	Control Set	Oligo aCGH	79	206	Graubert et al. 2007
nstd6	human	Control Set	Sequence alignment	415,434	415,434	Mills et al. 2006
nstd7	mouse	Control Set	Oligo aCGH	1,333	5,211	Cahan et al. 2009
nstd8	chimpanzee	Control Set	BAC aCGH	791	4,501	Perry et al. 2008b
nstd8	human	Control Set	BAC aCGH	791	4,501	Perry et al. 2008b
nstd9	chimpanzee	Control Set	BAC aCGH	359	659	Perry et al. 2006
nstd10	dog	Control Set	Oligo aCGH	677	3,997	Nicholas et al. 2009
nstd11	human	Tumor vs. Matched-Normal	SNP array	211	211	Walter et al. 2009
nstd12	human	Case-Set	SNP array	3,396	7,429	Marshall et al. 2008
nstd13	dog	Control Set	Oligo aCGH	57	152	Chen et al. 2009
nstd14	human	Control Set	SNP array	368	368	Cooper et al. 2008
nstd15	mouse	Control Set	Oligo aCGH	2,094	2,094	Cutler et al. 2007
nstd16	human	Control Set	Paired-end mapping	1,297	1,297	Korbel et al. 2007
nstd17	human	Control Set	SNP genotyping analysis	935	935	Conrad et al. 2006
nstd18	mouse	Control Set	Oligo aCGH,ROMA	39	862	Egan et al. 2007
nstd19	mouse	Control Set	Paired-end mapping,Read-depth analysis	7,393	7,393	Quinlan et al. 2010
nstd20	human	Control Set	SNP genotyping analysis	539	3,905	McCarroll et al. 2006
nstd21	human	Control Set	SNP array	13,566	54,462	Shaikh et al. 2009
nstd22	human	Control Set	SNP array	1,319	0	McCarroll et al. 2008
nstd23	human	Control Set	MLPA,Sequence alignment	10	10	Young et al. 2008
nstd24	pig	Control Set	Oligo aCGH	37	145	Fadista et al. 2008
nstd25	fruit fly	Control Set	Oligo aCGH	1,585	1,585	Dopman et al. 2007
nstd26	fruit fly	Control Set	Oligo aCGH	3,639	3,639	Emerson et al. 2008
nstd27	human	Control Set	SNP genotyping analysis	13,843	13,843	Itsara et al. 2009
nstd28	human	Case-Set	Oligo aCGH	6	6	Zhang et al. 2009
nstd29	human	Control Set	BAC aCGH	388	388	Locke et al. 2006
nstd30	human	Control Set	SNP genotyping analysis	1,428	3,436	Jakobsson et al. 2008
nstd31	human	Control Set	Read-depth analysis	226	607	Alkan et al. 2009
nstd32	human	Control Set	BAC aCGH	119	2,504	Sharp et al. 2005
nstd33	human	Case-Set	Oligo aCGH	4	4	Sharp et al. 2007
nstd34	human	Control Set	Oligo aCGH	100	100	Hinds et al. 2006
nstd35	human	Control Set	OEA assembly,Paired-end mapping,Sequencing	9,825	7,163	Kidd et al. 2010
nstd36	human	Case-Set	Oligo aCGH,Sequencing	397	794	Mitsui et al. 2010
nstd37	human	Case-Set	Oligo aCGH	8,687	12,924	ISCA
nstd39	human	Control Set	Read-depth analysis	187	187	Schuster et al. 2010
nstd40	human	Case-Control	BAC aCGH	689	689	Sharp et al. 2006
nstd41	human	Case-Control	BAC aCGH	255	255	Iafrate et al. 2004
nstd42	human	Case-Set	Oligo aCGH,qPCR	1	11	Sharp et al. 2008
nstd43	human	Control Set	Oligo aCGH,SNP array,Sequencing	1,318	1,333	Kim et al. 2009
nstd44	pig	Control Set	SNP genotyping analysis	49	49	Ramayo-Caldas et al. 2010
nstd45	human	Curated	Curated	57	84	ISCA curated dataset
nstd46	human	Control Set	Oligo aCGH,PCR,qPCR	1,183	1,183	Campbell et al. 2011
nstd47	human	Control Set	Sequencing	1,167	1,167	Kidd et al. 2010b
nstd48	mouse	Control Set	Oligo aCGH	7,090	30,795	Henrichsen et al. 2009
nstd49	human	Control Set	Optical mapping	4,205	7,032	Teague et al. 2010
nstd50	human	Control Set	Paired-end mapping,SNP array	2,642	2,642	Wilson et al. 2010
nstd51	human	Curated	Curated	45	45	User submitted curated variants
nstd52	human	Case-Set	SNP array	1	1	Watkins et al. 2011
nstd54	human	Case-Control	Oligo aCGH,SNP array	81,345	468,909	Cooper et al. 2011
nstd55	human	Control Set	Sequencing	7	9	XueZhang et al. 2011
nstd56	cattle	Control Set	FISH,Oligo aCGH,qPCR	177	1,039	Liu et al. 2010
nstd57	horse	Control Set	Oligo aCGH,Sequencing	193,625	193,625	Doan et al. 2011
nstd58	human	Control Set	SNP array	7	7	Forsberg et al. 2012
nstd60	cattle	Control Set	SNP array,qPCR	682	3,666	Hou et al. 2011
nstd61	cattle	Case-Control	SNP array,qPCR	579	1,179	Hou et al. 2011b
nstd62	zebrafish	Control Set	Oligo aCGH	6,080	31,749	Brown et al. 2012
nstd63	sorghum	Control Set	Sequencing	32,246	32,261	Zheng et al. 2011
nstd64	human	Control Set	SNP array	1,383	2,987	Wang et al. 2007
nstd65	human	Control Set	Sequencing	1,299	1,299	Ju et al. 2010
nstd66	human	Control Set	ROMA	81	239	Sebat et al. 2004
nstd67	human	Control Set	Oligo aCGH	7,950	20,099	Park et al. 2010
nstd68	human	Control Set	BAC aCGH	5,132	14,709	Wong et al. 2007
nstd69	cattle	Control Set	FISH,Sequencing,qPCR	1,265	4,697	Bickhart et al. 2012
nstd70	mouse	Control Set	Sequencing	525	763	Yasuda et al. 2012
estd1	human	Control Set	BAC aCGH,SNP array	1,433	25,193	Redon et al. 2006
estd3	human	Control Set	Sequencing	2,682	2,682	Wang et al. 2008
estd19	human	Control Set	Sequencing	4,298	4,298	Ahn et al. 2009
estd20	human	Control Set	Oligo aCGH	20,206	51,981	Conrad et al. 2009
estd21	human	Control Set	Oligo aCGH	23	23	Wheeler et al. 2008
estd22	human	Control Set	Oligo aCGH,SNP array	45	45	Levy et al. 2007
estd24	human	Control Set	Oligo aCGH	1,469	9,282	de Smith et al. 2007
estd48	human	Control Set	PCR	1	0	Stefansson et al. 2005
estd49	human	Control Set	SNP array,SNP genotyping analysis	196	29	Gusev et al. 2009
estd50	human	Case-Control	FISH	2	0	Giglio et al. 2002
estd55	human	Control Set	SNP array	976	7,077	Pinto et al. 2007
estd59	human	Control Set	Sequencing	218,039	2,150,366	Durbin et al. 2010
estd176	human	Control Set	SNP array	734	1,081	Banerjee et al. 2011
estd180	human	Control Set	Oligo aCGH,SNP array,Sequencing	23,887	23,887	Pang et al. 2010
estd188	human	Control Set	BAC aCGH,Oligo aCGH,SNP array	60,247	60,247	Pinto et al. 2011
estd193	human	Control Set	FISH,PCR	3	3	Feuk et al. 2005
estd194	human	Control Set	Sequencing	504,912	504,912	Bentley et al. 2008
estd195	human	Control Set	SNP array	856	159,337	Altshuler et al. 2010
estd196	human	Control Set	SNP array,qPCR	335	335	Simon-Sanchez et al. 2007
estd197	human	Control Set	Sequencing	232,775	232,775	McKernan et al. 2009