NM_005245.4(FAT1):c.2600_2601del (p.Thr867fs) AND Congenital myasthenic syndrome 12

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Jun 20, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000991431.1

Allele description [Variation Report for NM_005245.4(FAT1):c.2600_2601del (p.Thr867fs)]

NM_005245.4(FAT1):c.2600_2601del (p.Thr867fs)

Gene:

FAT1:FAT atypical cadherin 1 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

4q35.2

Genomic location:

Preferred name:

NM_005245.4(FAT1):c.2600_2601del (p.Thr867fs)

HGVS:

NC_000004.12:g.186707228GT[1]
NC_000004.12:g.186707228_186707229GT[1]
NG_046994.1:g.24686CA[1]
NM_005245.4:c.2600_2601delMANE SELECT
NP_005236.2:p.Thr867fs
NC_000004.11:g.187628382GT[1]

Protein change:

T867fs

Links:

dbSNP: rs1579484850

NCBI 1000 Genomes Browser:

rs1579484850

Molecular consequence:

NM_005245.4:c.2600_2601del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Congenital myasthenic syndrome 12 (CMS12)
Synonyms:: MYASTHENIC SYNDROME, CONGENITAL, WITH TUBULAR AGGREGATES 1; Myasthenia, congenital, 12, with tubular aggregates
Identifiers:: MONDO: MONDO:0012518; MedGen: C3552335; Orphanet: 353327; Orphanet: 590; OMIM: 610542

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001142828	Hadassah Hebrew University Medical Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Jun 20, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001142828

Hadassah Hebrew University Medical Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Jun 20, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Hadassah Hebrew University Medical Center, SCV001142828.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 24, 2022

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