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NM_002693.3(POLG):c.2724C>T (p.Ala908=) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (3 submissions)
Last evaluated:
May 6, 2020
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000676322.13

Allele description [Variation Report for NM_002693.3(POLG):c.2724C>T (p.Ala908=)]

NM_002693.3(POLG):c.2724C>T (p.Ala908=)

Genes:
POLG:DNA polymerase gamma, catalytic subunit [Gene - OMIM - HGNC]
POLGARF:POLG alternative reading frame [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q26.1
Genomic location:
Preferred name:
NM_002693.3(POLG):c.2724C>T (p.Ala908=)
Other names:
p.A908A:GCC>GCT
HGVS:
  • NC_000015.10:g.89321135G>A
  • NG_008218.2:g.18661C>T
  • NM_001126131.2:c.2724C>T
  • NM_002693.3:c.2724C>TMANE SELECT
  • NP_001119603.1:p.Ala908=
  • NP_002684.1:p.Ala908=
  • NP_002684.1:p.Ala908=
  • LRG_765t1:c.2724C>T
  • LRG_765:g.18661C>T
  • LRG_765p1:p.Ala908=
  • NC_000015.9:g.89864366G>A
  • NM_002693.2:c.2724C>T
Links:
dbSNP: rs377390914
NCBI 1000 Genomes Browser:
rs377390914
Molecular consequence:
  • NM_001126131.2:c.2724C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_002693.3:c.2724C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000226607Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Jan 4, 2015)
germlineclinical testing

Citation Link,

SCV000802083Mayo Clinic Laboratories, Mayo Clinic
no assertion criteria provided
Likely benign
(Feb 25, 2016)
unknownclinical testing

SCV001474643Athena Diagnostics Inc
criteria provided, single submitter

(Athena Diagnostics Criteria)
Likely benign
(May 6, 2020)
unknownclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown2not providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

The mtDNA replication-related genes TFAM and POLG are associated with leprosy in Han Chinese from Southwest China.

Wang D, Li GD, Fan Y, Zhang DF, Bi R, Yu XF, Long H, Li YY, Yao YG.

J Dermatol Sci. 2017 Dec;88(3):349-356. doi: 10.1016/j.jdermsci.2017.09.001. Epub 2017 Sep 14.

PubMed [citation]
PMID:
28958595

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Eurofins Ntd Llc (ga), SCV000226607.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided2not providednot providednot provided

From Mayo Clinic Laboratories, Mayo Clinic, SCV000802083.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics Inc, SCV001474643.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 28, 2024