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NM_000257.3(MYH7):c.4004C>T (p.Ser1335Leu) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 29, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000484605.1

Allele description

NM_000257.3(MYH7):c.4004C>T (p.Ser1335Leu)

Gene:
MYH7:myosin heavy chain 7 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q11.2
Genomic location:
Preferred name:
NM_000257.3(MYH7):c.4004C>T (p.Ser1335Leu)
HGVS:
  • NC_000014.9:g.23418375G>A
  • NG_007884.1:g.22287C>T
  • NM_000257.3:c.4004C>T
  • NP_000248.2:p.Ser1335Leu
  • LRG_384t1:c.4004C>T
  • LRG_384:g.22287C>T
  • LRG_384p1:p.Ser1335Leu
  • NC_000014.8:g.23887584G>A
  • NM_000257.2:c.4004C>T
  • c.4004C>T
Protein change:
S1335L
Links:
dbSNP: rs397516199
NCBI 1000 Genomes Browser:
rs397516199
Allele Frequency:
0.00003(A)
Molecular consequence:
  • NM_000257.3:c.4004C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000565291GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(May 29, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000565291.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The S1335L variant in the MYH7 gene has not been published as a , nor has it been reported as a benign polymorphism to our knowledge. The S1335L variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The S1335L variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species. In silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function. Missense variants in nearby residues (A1332T, R1337Q, R1344W) have been reported in the Human Gene Mutation Database in association with cardiomyopathy (Stenson et al., 2014), supporting the functional importance of this region of the protein. The S1335L variant is a strong candidate for a disease-causing variant which may be related to the lower extremity weakness reported in this individual. However, the possibility it may be a rare benign variant cannot be excluded.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 11, 2017