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NM_001114753.3(ENG):c.1657del (p.Leu553fs) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 28, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000482934.1

Allele description

NM_001114753.3(ENG):c.1657del (p.Leu553fs)

Genes:
ENG:endoglin [Gene - OMIM - HGNC]
LOC102723566:uncharacterized LOC102723566 [Gene]
Variant type:
Deletion
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_001114753.3(ENG):c.1657del (p.Leu553fs)
HGVS:
  • NC_000009.12:g.127818151del
  • NG_009551.1:g.41620del
  • NM_001114753.3:c.1657delMANE SELECT
  • NM_001278138.2:c.1111del
  • NP_000109.1:p.Leu553fs
  • NP_001108225.1:p.Leu553fs
  • NP_001265067.1:p.Leu371fs
  • LRG_589t1:c.1657del
  • LRG_589:g.41620del
  • LRG_589p1:p.Leu553fs
  • NM_000118.2:c.1657delC
  • NM_000118.3:c.1657del
Protein change:
L371fs
Links:
dbSNP: rs1064794218
NCBI 1000 Genomes Browser:
rs1064794218
Molecular consequence:
  • NM_001114753.3:c.1657del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001278138.2:c.1111del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000568242GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Dec 28, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000568242.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.1657delC likely pathogenic variant in the ENG gene has been previously published in association with HHT (reported at cDNA position 1655 due to alternate nomenclature) (McAllister et al., 1995). This variant causes a shift in reading frame starting at codon leucine 553, changing it to a cysteine, and creating a premature stop codon at position 20 of the new reading frame, denoted p.Leu553CysfsX20. This variant is expected to result in an abnormal, truncated protein product due to replacement of the last 73 amino acid residues of the protein with 19 incorrect amino acid residues. Multiple other frameshift variants in the ENG gene have been reported in the Human Gene Mutation Database in association with HHT (Stenson et al., 2014). Furthermore, the c.1657delC variant is not observed in large population cohorts (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 21, 2022