U.S. flag

An official website of the United States government

NM_002168.4(IDH2):c.419G>A (p.Arg140Gln) AND Myelodysplastic syndrome

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 31, 2016
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000431189.1

Allele description

NM_002168.4(IDH2):c.419G>A (p.Arg140Gln)

Gene:
IDH2:isocitrate dehydrogenase (NADP(+)) 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q26.1
Genomic location:
Preferred name:
NM_002168.4(IDH2):c.419G>A (p.Arg140Gln)
HGVS:
  • NC_000015.10:g.90088702C>T
  • NG_023302.1:g.18775G>A
  • NM_001289910.1:c.263G>A
  • NM_001290114.2:c.29G>A
  • NM_002168.4:c.419G>AMANE SELECT
  • NP_001276839.1:p.Arg88Gln
  • NP_001277043.1:p.Arg10Gln
  • NP_002159.2:p.Arg140Gln
  • NP_002159.2:p.Arg140Gln
  • LRG_611t1:c.263G>A
  • LRG_611t2:c.419G>A
  • LRG_611:g.18775G>A
  • LRG_611p1:p.Arg88Gln
  • LRG_611p2:p.Arg140Gln
  • NC_000015.9:g.90631934C>T
  • NM_002168.2:c.419G>A
  • NM_002168.3:c.419G>A
  • P48735:p.Arg140Gln
Protein change:
R10Q; ARG140GLN
Links:
UniProtKB: P48735#VAR_065175; OMIM: 147650.0001; dbSNP: rs121913502
NCBI 1000 Genomes Browser:
rs121913502
Molecular consequence:
  • NM_001289910.1:c.263G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001290114.2:c.29G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002168.4:c.419G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Myelodysplastic syndrome (MDS)
Synonyms:
MYELODYSPLASTIC SYNDROME, SUSCEPTIBILITY TO; Myelodysplastic syndrome, somatic; Myelodysplastic syndromes
Identifiers:
MONDO: MONDO:0018881; MeSH: D009190; MedGen: C3463824; Orphanet: 52688; OMIM: 614286

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000504573Database of Curated Mutations (DoCM)
no assertion criteria provided
Likely pathogenic
(May 31, 2016)
somaticliterature only

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.

Chang MT, Asthana S, Gao SP, Lee BH, Chapman JS, Kandoth C, Gao J, Socci ND, Solit DB, Olshen AB, Schultz N, Taylor BS.

Nat Biotechnol. 2016 Feb;34(2):155-63. doi: 10.1038/nbt.3391. Epub 2015 Nov 30.

PubMed [citation]
PMID:
26619011
PMCID:
PMC4744099

Details of each submission

From Database of Curated Mutations (DoCM), SCV000504573.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 15, 2022