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NM_000192.3(TBX5):c.373G>C (p.Gly125Arg) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 13, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000200855.1

Allele description

NM_000192.3(TBX5):c.373G>C (p.Gly125Arg)

Gene:
TBX5:T-box transcription factor 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.21
Genomic location:
Preferred name:
NM_000192.3(TBX5):c.373G>C (p.Gly125Arg)
Other names:
p.G125R:GGC>CGC
HGVS:
  • NC_000012.12:g.114398710C>G
  • NG_007373.1:g.14733G>C
  • NM_000192.3:c.373G>C
  • NM_080717.3:c.223G>C
  • NM_181486.3:c.373G>C
  • NP_000183.2:p.Gly125Arg
  • NP_542448.1:p.Gly75Arg
  • NP_852259.1:p.Gly125Arg
  • LRG_670t1:c.373G>C
  • LRG_670:g.14733G>C
  • LRG_670p1:p.Gly125Arg
  • NC_000012.11:g.114836515C>G
Protein change:
G125R
Links:
dbSNP: rs863223773
NCBI 1000 Genomes Browser:
rs863223773
Molecular consequence:
  • NM_000192.3:c.373G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080717.3:c.223G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181486.3:c.373G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000250812GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(May 13, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000250812.13

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The G125R missense mutation in the TBX5 gene has been reported in association with atypical Holt-Oram syndrome (HOS) and paroxysmal atrial fibrillation, where it was found to co-segregate with disease in affected family members (Postma et al., 2008). In contrast to all currently known missense mutations in the TBX5 gene, in vitro assays suggest G125R acts as a gain-of-function mutation. It was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. G125R is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species and in silico analysis predicts this variant is probably damaging to the protein structure/function. In addition, missense mutations in nearby residues (D111Y, W121G) have been reported in association with Holt-Oram syndrome, supporting the functional importance of this region of the protein. This variant was found in TBX5

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 27, 2021