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NM_001374828.1(ARID1B):c.5522del (p.Lys1841fs) AND Coffin-Siris syndrome 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 11, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000194488.1

Allele description

NM_001374828.1(ARID1B):c.5522del (p.Lys1841fs)

Gene:
ARID1B:AT-rich interaction domain 1B [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
6q25.3
Genomic location:
Preferred name:
NM_001374828.1(ARID1B):c.5522del (p.Lys1841fs)
HGVS:
  • NC_000006.12:g.157206294del
  • NG_066624.1:g.435269del
  • NM_001363725.2:c.3023del
  • NM_001371656.1:c.5402del
  • NM_001374820.1:c.5402del
  • NM_001374828.1:c.5522delMANE SELECT
  • NM_017519.3:c.5363del
  • NM_020732.3:c.5153del
  • NP_001350654.1:p.Lys1008fs
  • NP_001358585.1:p.Lys1801fs
  • NP_001361749.1:p.Lys1801fs
  • NP_001361757.1:p.Lys1841fs
  • NP_059989.3:p.Lys1788fs
  • NP_065783.3:p.Lys1718fs
  • NC_000006.11:g.157527428del
Protein change:
K1008fs
Links:
dbSNP: rs797045281
NCBI 1000 Genomes Browser:
rs797045281
Molecular consequence:
  • NM_001363725.2:c.3023del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001371656.1:c.5402del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001374820.1:c.5402del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001374828.1:c.5522del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_017519.3:c.5363del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_020732.3:c.5153del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Coffin-Siris syndrome 1 (CSS1)
Synonyms:
Mental retardation, autosomal dominant 12; Hypertrichosis, hyperkeratosis, mental retardation, and distinctive facial features
Identifiers:
MONDO: MONDO:0007617; MedGen: C3281201; Orphanet: 1465; OMIM: 135900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000246532Genetic Services Laboratory, University of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Dec 11, 2014) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV000246532.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 25, 2021