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NM_000834.3(GRIN2B):c.2060C>T (p.Pro687Leu) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 10, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000187698.1

Allele description

NM_000834.3(GRIN2B):c.2060C>T (p.Pro687Leu)

Gene:
GRIN2B:glutamate ionotropic receptor NMDA type subunit 2B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p13.1
Genomic location:
Preferred name:
NM_000834.3(GRIN2B):c.2060C>T (p.Pro687Leu)
HGVS:
  • NC_000012.12:g.13571915G>A
  • NG_031854.1:g.413174C>T
  • NM_000834.3:c.2060C>T
  • NP_000825.2:p.Pro687Leu
  • NC_000012.11:g.13724849G>A
  • p.P687L
Protein change:
P687L
Links:
dbSNP: rs796052572
NCBI 1000 Genomes Browser:
rs796052572
Molecular consequence:
  • NM_000834.3:c.2060C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Identifiers:
MedGen: CN221809

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000241295GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Jun 10, 2014)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000241295.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Pro687Leu (CCC>CTC): c.2060 C>T in exon 10 in the GRIN2B gene (NM_000834.3). The P687L variant in the GRIN2B gene has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. The P687L variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The P687L variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a position that is well conserved across species. In silico analysis predicts this variant is probably damaging to the protein structure/function. At least one missense mutation in a nearby residue (R682C) has been reported in association with intellectual disability with behavioral anomalies, supporting the functional importance of this region of the protein. The P687L variant is a good candidate for a disease-causing mutation. However, the possibility it may be a rare benign variant cannot be excluded. The variant is found in GRIN2B panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 26, 2017