NM_000465.4(BARD1):c.842C>T (p.Pro281Leu) AND Hereditary cancer-predisposing syndrome

Germline classification:: Likely benign (2 submissions)
Last evaluated:: Jan 2, 2024
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000165427.13

Allele description [Variation Report for NM_000465.4(BARD1):c.842C>T (p.Pro281Leu)]

NM_000465.4(BARD1):c.842C>T (p.Pro281Leu)

Gene:

BARD1:BRCA1 associated RING domain 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q35

Genomic location:

Preferred name:

NM_000465.4(BARD1):c.842C>T (p.Pro281Leu)

Other names:

NP_000456.2:p.Pro281Leu

HGVS:

NC_000002.12:g.214781032G>A
NG_012047.3:g.33680C>T
NM_000465.4:c.842C>TMANE SELECT
NM_001282543.2:c.785C>T
NM_001282545.2:c.215+16029C>T
NM_001282548.2:c.158+28380C>T
NM_001282549.2:c.364+11265C>T
NP_000456.2:p.Pro281Leu
NP_001269472.1:p.Pro262Leu
LRG_297t1:c.842C>T
LRG_297:g.33680C>T
LRG_297p1:p.Pro281Leu
NC_000002.11:g.215645756G>A
NG_012047.2:g.33673C>T
NM_000465.2:c.842C>T
NM_000465.3:c.842C>T
NR_104212.2:n.807C>T
NR_104215.2:n.750C>T
p.P281L

Protein change:

P262L

Links:

dbSNP: rs367890377

NCBI 1000 Genomes Browser:

rs367890377

Molecular consequence:

NM_001282545.2:c.215+16029C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_001282548.2:c.158+28380C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_001282549.2:c.364+11265C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_000465.4:c.842C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001282543.2:c.785C>T - missense variant - [Sequence Ontology: SO:0001583]
NR_104212.2:n.807C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_104215.2:n.750C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000216156	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Likely benign (Jan 2, 2024)	germline	clinical testing	Citation Link,
SCV000903474	Color Diagnostics, LLC DBA Color Health	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Nov 16, 2020)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000216156

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Likely benign
(Jan 2, 2024)

germline

clinical testing

Citation Link,

SCV000903474

Color Diagnostics, LLC DBA Color Health

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Nov 16, 2020)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Ambry Genetics, SCV000216156.8

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Color Diagnostics, LLC DBA Color Health, SCV000903474.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 2, 2024

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