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NM_005159.4(ACTC1):c.886T>A (p.Tyr296Asn) AND Cardiomyopathy

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 19, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000157796.1

Allele description

NM_005159.4(ACTC1):c.886T>A (p.Tyr296Asn)

Genes:
ACTC1:actin, alpha, cardiac muscle 1 [Gene - OMIM - HGNC]
LOC101928174:uncharacterized LOC101928174 [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
15q14
Genomic location:
Preferred name:
NM_005159.4(ACTC1):c.886T>A (p.Tyr296Asn)
Other names:
p.Y296N:TAT>AAT
HGVS:
  • NC_000015.10:g.34791218A>T
  • NG_007553.1:g.9509T>A
  • NM_005159.4:c.886T>A
  • NP_005150.1:p.Tyr296Asn
  • LRG_388t1:c.886T>A
  • LRG_388:g.9509T>A
  • LRG_388p1:p.Tyr296Asn
  • NC_000015.9:g.35083419A>T
Protein change:
Y296N
Links:
dbSNP: rs730880402
NCBI 1000 Genomes Browser:
rs730880402
Molecular consequence:
  • NM_005159.4:c.886T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiomyopathy
Identifiers:
MedGen: CN001491; Human Phenotype Ontology: HP:0001638

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000207726GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Feb 19, 2014)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000207726.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This mutation is denoted c.886 T>A at the cDNA level or p.Tyr296Asn (Y296N) at the protein level. Although Tyr296Asn has not been reported previously as a disease-causing mutation to our knowledge, Tyr296Asn results in a non-conservative amino acid substitution of Tyrosine residue 296, a phosphotyrosine site that is a highly conserved position in the alpha-actin gene across several species. Another missense mutation affecting an adjacent codon, Ala297Ser (aka A297S), has been reported in association with HCM (Mogensen J et al., 1999). Mogensen et al. reported that this residue is localized at the actin surface close to a possible myosin-binding site, further supporting the functional importance of this region of the protein. In addition, the NHLBI ESP Exome Variant Server reports Tyr296Asn was not observed in approximately 5,000 samples from individuals of European and African American backgrounds, indicating it is not a common benign variant in these populations. Therefore, the presence of this mutation indicates that an individual can be at increased risk to develop HCM. However, other genetic and environmental factors influence disease expression and severity, and some mutation carriers may never become symptomatic.The variant is found in ACTC1 panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 22, 2017