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NM_000363.4(TNNI3):c.484C>T (p.Arg162Trp) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 20, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000154211.1

Allele description

NM_000363.4(TNNI3):c.484C>T (p.Arg162Trp)

Gene:
TNNI3:troponin I3, cardiac type [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.42
Genomic location:
Preferred name:
NM_000363.4(TNNI3):c.484C>T (p.Arg162Trp)
Other names:
p.R162W:CGG>TGG
HGVS:
  • NC_000019.10:g.55154095G>A
  • NG_007866.2:g.8638C>T
  • NM_000363.4:c.484C>T
  • NP_000354.4:p.Arg162Trp
  • LRG_432t1:c.484C>T
  • LRG_432:g.8638C>T
  • LRG_432p1:p.Arg162Trp
  • NC_000019.9:g.55665463G>A
Protein change:
R162W
Links:
dbSNP: rs368861241
NCBI 1000 Genomes Browser:
rs368861241
Allele Frequency:
0.00003(A)
Molecular consequence:
  • NM_000363.4:c.484C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
5

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000203864Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Uncertain significance
(Feb 20, 2014)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided115not providednot providednot providedclinical testing

Citations

PubMed

Altered regulatory properties of human cardiac troponin I mutants that cause hypertrophic cardiomyopathy.

Elliott K, Watkins H, Redwood CS.

J Biol Chem. 2000 Jul 21;275(29):22069-74.

PubMed [citation]
PMID:
10806205

Functional consequences of the mutations in human cardiac troponin I gene found in familial hypertrophic cardiomyopathy.

Takahashi-Yanaga F, Morimoto S, Harada K, Minakami R, Shiraishi F, Ohta M, Lu QW, Sasaguri T, Ohtsuki I.

J Mol Cell Cardiol. 2001 Dec;33(12):2095-107.

PubMed [citation]
PMID:
11735257
See all PubMed Citations (5)

Details of each submission

From Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine, SCV000203864.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided11not providednot providedclinical testing PubMed (5)

Description

The Arg162Trp variant in TNNI3 has been reported in 1 Japanese individual with HCM and was absent from over 500 control chromosomes (Kimura 1997). It has also been identified in 1/8314 European American chromosomes from a broad population by the NHLBI Exome Sequencing Project (http://evs.gs.washington.edu/EVS). Cell culture studies showed that the variant compromises TNNI3 function (Elliott 2000, Takahashi-Yanaga 2001). Our laboratory has detected the variant in 4 individuals with HCM (1 Caucasian adult, 2 Indian adolescents, and 1 Jordanian adolescent). In two of the non-Caucasian families (one Indian and one Jordanian), the inheritance was consistent with a recessive mode (3 affected individuals were homozygous from the 2 families and none of the heterozygous individuals were affected). In contrast, the previously reported individual with HCM (Kimura 1997), the Caucasian individual and one Indian individual tested by our laboratory were heterozygous, which is consistent with dominant inheritance. Although recessive inheritance has been described for the TNNI3 gene (Ala2Val; Murphy 2004), it is also possible that the Arg162Trp variant is common in Middle Eastern and/or Asian populations and therefore less likely to be disease-causing. At this time, we cannot rule out this possibility because control studies are not available for these populations. Arginine (Arg) at position 162 is conserved in mammals except two bat species, but not in evolutionarily distant species, raising the possibility that a change at this position may be tolerated or have a weaker effect. However, two other likely disease-causing variants have been identified at this position (Arg162Pro, Arg162Gln). In summary, it is possible that this variant is disease-causing, but has a milder effect in isolation (heterozygous) and results in HCM when seen with another variant(s) (homozygous or compound heterozygous). However, additional studies are required to further assess its clinical significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided11not provided5not provided

Last Updated: Mar 16, 2018