U.S. flag

An official website of the United States government

  • previous

NM_000257.3(MYH7):c.4283T>C (p.Leu1428Ser) AND not specified

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
May 26, 2017
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000151240.2

Allele description

NM_000257.3(MYH7):c.4283T>C (p.Leu1428Ser)

Genes:
MYH7:myosin heavy chain 7 [Gene - OMIM - HGNC]
MHRT:myosin heavy chain associated RNA transcript [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q11.2
Genomic location:
Preferred name:
NM_000257.3(MYH7):c.4283T>C (p.Leu1428Ser)
Other names:
p.L1428S:TTG>TCG
HGVS:
  • NC_000014.9:g.23417573A>G
  • NG_007884.1:g.23089T>C
  • NM_000257.3:c.4283T>C
  • NP_000248.2:p.Leu1428Ser
  • LRG_384:g.23089T>C
  • LRG_384p1:p.Leu1428Ser
  • NC_000014.8:g.23886782A>G
  • NM_000257.2:c.4283T>C
Protein change:
L1428S
Links:
dbSNP: rs727503244
NCBI 1000 Genomes Browser:
rs727503244
Allele Frequency:
0.00003(G)
Molecular consequence:
  • NM_000257.3:c.4283T>C - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000199117Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Uncertain significance
(Jan 14, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000208587GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(May 26, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot provided21not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine, SCV000199117.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)

Description

The p.Leu1428Ser variant in MYH7 has been identified in 1 individual with HCM (LMM, unpublished data) and has been identified in 4/67704 European chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org). Leucine (Leu) at position 1428 is highly conserved in mammals and across evolutionarily distant species and the change to serine (Ser) was predicted to be pathogenic using a computational tool clinically validated by our laboratory. This tool's pathogenic prediction is estimated to be correct 94% of the time (Jordan 2011). In summary, while there is some suspicion for a pathogenic role, the clinical significance of the p.Leu1428Ser variant is uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided2not provided1not provided

From GeneDx, SCV000208587.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Leu1428Ser (TTG>TCG): c.4283 T>C in exon 31 of the MYH7 gene (NM_000257.2). A missense variant that is likely pathogenic was identified in the MYH7 gene. It has not been published as a mutation or been reported as a benign polymorphism to our knowledge, however it has been identified in other unrelated individuals tested at GeneDx. The L1428S variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The L1428S variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. Additionally, the L1428 residue, located in the myosin heavy chain, is conserved across species. In silico analysis predicts this variant is probably damaging to the protein structure/function. Lastly, Missense mutations in nearby residues (R1420W, R1420Q, E1426K, R1434C) have been reported in association with cardiomyopathy, supporting the functional importance of this region of the protein. Therefore, this variant is a strong candidate for a pathogenic mutation, however the possibility that it is a benign variant cannot be excluded. The variant is found in DCM,HCM panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 14, 2018